8YHS

The Crystal Structure of BRDT from Biortus.

• PDB DOI: https://doi.org/10.2210/pdb8YHS/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-02-28 Released: 2024-03-13 
• Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Meng, Q., Lu, Y.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.222 
• R-Value Work: 0.184 

Starting Model: experimental

Literature

The Crystal Structure of BRDT from Biortus.

Wang, F., Cheng, W., Lv, Z., Meng, Q., Lu, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 14.44 kDa 
• Atom Count: 1,103 
• Modelled Residue Count: 108 
• Deposited Residue Count: 117 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bromodomain testis-specific protein	A	117	Homo sapiens	Mutation(s): 0  Gene Names: BRDT
UniProt & NIH Common Fund Data Resources
Find proteins for Q58F21 (Homo sapiens) Go to UniProtKB:  Q58F21
PHAROS:  Q58F21 GTEx:  ENSG00000137948

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A1D6J	B [auth A]	2,4-dimethyl-6-[6-(oxan-4-yl)-1-[(1~{S})-1-phenylethyl]imidazo[4,5-c]pyridin-2-yl]pyridazin-3-one C25 H27 N5 O2 QNFGQQDKBYVNAS-KRWDZBQOSA-N
EDO	C [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.222 
• R-Value Work: 0.184 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.567	α = 90
b = 44.38	β = 90
c = 72.125	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-13 
Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Meng, Q., Lu, Y.

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Funding Organization	Location	Grant Number
Not funded	China	--

Revision History  

• Version 1.0: 2024-03-13
  Type: Initial release