8Z2W

Crystal structure of apo- exo-beta-(1,3)-glucanase from Aspergillus oryzae (AoBgl)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.145 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Crystal structures of Aspergillus oryzae exo-beta-(1,3)-glucanase reveal insights into oligosaccharide binding, recognition, and hydrolysis.

Banerjee, B.Kamale, C.K.Suryawanshi, A.B.Dasgupta, S.Noronha, S.Bhaumik, P.

(2024) FEBS Lett 

  • DOI: https://doi.org/10.1002/1873-3468.15045
  • Primary Citation of Related Structures:  
    8Z2W, 8Z2X, 8Z2Y

  • PubMed Abstract: 

    Exo-β-(1,3)-glucanases are promising enzymes for use in the biofuel industry as they hydrolyse sugars such as laminarin, a major constituent of the algal cell wall. This study reports structural and biochemical characterizations of Aspergillus oryzae exo-β-(1,3)-glucanase (AoBgl) belonging to the GH5 family. Purified AoBgl hydrolyses β-(1,3)-glycosidic linkages of the oligosaccharide laminaritriose and the polysaccharide laminarin effectively. We have determined three high-resolution structures of AoBgl: (a) the apo form at 1.75 Å, (b) the complexed form with bound cellobiose at 1.73 Å and (c) the glucose-bound form at 1.20 Å. The crystal structures, molecular dynamics simulation studies and site-directed mutagenesis reveal the mode of substrate binding and interactions at the active site. The results also indicate that AoBgl effectively hydrolyses trisaccharides and higher oligosaccharides. The findings from our structural and biochemical studies would aid in rational engineering efforts to generate superior AoBgl variants and similar GH5 enzymes for their industrial use.


  • Organizational Affiliation

    Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, India.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glucan 1,3-beta-glucosidase A411Aspergillus oryzaeMutation(s): 0 
Gene Names: exgAexg1AO090003000990
EC: 3.2.1.58
UniProt
Find proteins for Q7Z9L3 (Aspergillus oryzae (strain ATCC 42149 / RIB 40))
Explore Q7Z9L3 
Go to UniProtKB:  Q7Z9L3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Z9L3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.145 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.488α = 90
b = 81.488β = 90
c = 115.16γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Biotechnology (DBT, India)IndiaBT/PR41982/PBD/26/822/2021

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-06
    Type: Initial release