Human eIF4A-1 in complex with AMP-PNP, RNA, and the inhibitor silvestrol
Bhatt, G.B., Naineni, S.K., Nagar, B.N.To be published.
Experimental Data Snapshot
Starting Model: in silico
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Eukaryotic initiation factor 4A-I | 406 | Homo sapiens | Mutation(s): 0  Gene Names: EIF4A1, DDX2A, EIF4A EC: 3.6.4.13 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P60842 (Homo sapiens) Explore P60842  Go to UniProtKB:  P60842 | |||||
PHAROS:  P60842 GTEx:  ENSG00000161960  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60842 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA oligonucleotide (AG)5 | 10 | Homo sapiens | |||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A1AG8 (Subject of Investigation/LOI) Query on A1AG8 | G [auth B] | silvestrol C34 H38 O13 GVKXFVCXBFGBCD-QKDMMWSPSA-N | |||
ANP (Subject of Investigation/LOI) Query on ANP | C [auth A] | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N | |||
IOD Query on IOD | E [auth A], F [auth A] | IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M | |||
MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 58.48 | α = 90 |
b = 84.295 | β = 90 |
c = 88.412 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data scaling |
PHASER | phasing |
HKL-2000 | data reduction |
Funding Organization | Location | Grant Number |
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Canadian Institutes of Health Research (CIHR) | Canada | -- |