9OV2 | pdb_00009ov2

Crystal structure of human IGA2M1 FC fragment-FC-alpha receptor (CD89) complex

• PDB DOI: https://doi.org/10.2210/pdb9OV2/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2025-05-29 Released: 2026-06-24 
• Deposition Author(s): Chandravanshi, M., Korzeniowski, M., Tolbert, W.D., Pazgier, M.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.249 (Depositor), 0.248 (DCC) 
• R-Value Work: 
  0.213 (Depositor), 0.214 (DCC) 
• R-Value Observed: 
  0.215 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of human IGA2M1 FC fragment-FC-alpha receptor (CD89) complex

Chandravanshi, M., Korzeniowski, M., Tolbert, W.D., Pazgier, M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 48.16 kDa 
• Atom Count: 3,338 
• Modeled Residue Count: 404 
• Deposited Residue Count: 421 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
IGA2M1 FC FRAGMENT	A	214	Homo sapiens	Mutation(s): 0  Gene Names: DKFZp686L19235
UniProt
Find proteins for Q6MZV6 (Homo sapiens) Explore Q6MZV6  Go to UniProtKB:  Q6MZV6
Glycosylation
Glycosylation Sites: 2

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Immunoglobulin alpha Fc receptor	B [auth C]	207	Homo sapiens	Mutation(s): 0  Gene Names: FCAR, CD89
UniProt & NIH Common Fund Data Resources
Find proteins for P24071 (Homo sapiens) Explore P24071  Go to UniProtKB:  P24071
PHAROS:  P24071 GTEx:  ENSG00000186431
Glycosylation
Glycosylation Sites: 2		Go to GlyGen: P24071-1

Oligosaccharides

Help  

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C [auth G]	3		N-Glycosylation

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	D [auth A], F [auth C], G [auth C]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N
CL	E [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.249 (Depositor), 0.248 (DCC) 
• R-Value Work:  0.213 (Depositor), 0.214 (DCC) 
• R-Value Observed: 0.215 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.683	α = 90
b = 129.553	β = 90
c = 183.343	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2026-06-24 
Deposition Author(s): Chandravanshi, M., Korzeniowski, M., Tolbert, W.D., Pazgier, M.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	P01AI162242

Revision History  

• Version 1.0: 2026-06-24
  Type: Initial release