9P03 | pdb_00009p03

Deposited: 2025-06-06 Released: 2026-06-10
Deposition Author(s): Goldberg, J.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Goldberg, J.

To be published.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein transport protein Sec23A	A	765	Homo sapiens	Mutation(s): 0 Gene Names: SEC23A
UniProt & NIH Common Fund Data Resources
Find proteins for Q15436 (Homo sapiens) Explore Q15436 Go to UniProtKB: Q15436
PHAROS: Q15436 GTEx: ENSG00000100934
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q15436
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein transport protein Sec24A	B	748	Homo sapiens	Mutation(s): 0 Gene Names: SEC24A
UniProt & NIH Common Fund Data Resources
Find proteins for O95486 (Homo sapiens) Explore O95486 Go to UniProtKB: O95486
PHAROS: O95486 GTEx: ENSG00000113615
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O95486
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Vesicle-trafficking protein SEC22b	C	157	Homo sapiens	Mutation(s): 0 Gene Names: SEC22B, SEC22L1
UniProt & NIH Common Fund Data Resources
Find proteins for O75396 (Homo sapiens) Explore O75396 Go to UniProtKB: O75396
PHAROS: O75396 GTEx: ENSG00000265808
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O75396
Sequence Annotations Expand
Reference Sequence

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1EP9 (Subject of Investigation/LOI) Query on A1EP9 Download:Ideal Coordinates CCD File SDF format, chain E [auth B] MOL2 format, chain E [auth B] mmCIF format, chain E [auth B]	E [auth B]	(2~{R},3~{R})-2-phenyl-3-(phenylmethyl)cyclopropane-1,1-dicarboxylic acid C₁₈ H₁₆ O₄ FEPODUVKSSAVKJ-CABCVRRESA-N		Interactions Focus chain E [auth B] Interactions & Density Focus chain E [auth B]
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] mmCIF format, chain D [auth A] mmCIF format, chain F [auth B]	D [auth A], F [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]