1C4K | pdb_00001c4k

ORNITHINE DECARBOXYLASE MUTANT (GLY121TYR)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1c4ka1	Alpha and beta proteins (a/b)	Flavodoxin-like	CheY-like	Ornithine decarboxylase N-terminal 'wing' domain	Ornithine decarboxylase N-terminal 'wing' domain	(Lactobacillus sp. 30A ) [TaxId: 1593 ],	SCOPe (2.08)
A	d1c4ka2	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	Ornithine decarboxylase major domain	Ornithine decarboxylase major domain	(Lactobacillus sp. 30A ) [TaxId: 1593 ],	SCOPe (2.08)
A	d1c4ka3	Alpha and beta proteins (a+b)	Ornithine decarboxylase C-terminal domain	Ornithine decarboxylase C-terminal domain	Ornithine decarboxylase C-terminal domain	Ornithine decarboxylase C-terminal domain	(Lactobacillus sp. 30A ) [TaxId: 1593 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Ornithine decarboxylase major domain	8020030	4000684	SCOP2 (2022-06-29)
A	SCOP2 Family	Ornithine decarboxylase C-terminal domain	8023844	4001976	SCOP2 (2022-06-29)
A	SCOP2 Family	Ornithine decarboxylase N-terminal wing domain	8031727	4003685	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PLP-dependent transferases	8032410	3000954	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ornithine decarboxylase C-terminal domain	8036224	3000629	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CheY-like	8044105	3001156	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	OKR_DC_1_C	e1c4kA1	A: a+b two layers	X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: OKR_DC_1_C	ECOD (v294.1)
A	OKR_DC_1	e1c4kA2	A: a+b two layers	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: OKR_DC_1	ECOD (v294.1)
A	OKR_DC_1_N	e1c4kA3	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: OKR_DC_1_N	ECOD (v294.1)
A	OKR_DC_1	e1c4kA4	A: a/b three-layered sandwiches	X: PLP-dependent transferases	H: PLP-dependent transferases	T: PLP-dependent transferases	F: OKR_DC_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.220	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (4.3.0)
A	3.90.1150.10	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1	Aspartate Aminotransferase, domain 1	CATH (4.3.0)
A	3.90.100.10	Alpha Beta	Alpha-Beta Complex	Ornithine Decarboxylase	Chain A, domain 4	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	PROTEIN (ORNITHINE DECARBOXYLASE)	vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding ornithine decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	amino acid metabolic process primary metabolic process metabolic process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011006	CheY-like superfamily	Homologous Superfamily
A	IPR027464	Ornithine decarboxylase, N-terminal	Homologous Superfamily
A	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily
A	IPR011193	Ornithine/lysine/arginine decarboxylase	Family
A	IPR008286	Orn/Lys/Arg decarboxylase, C-terminal	Domain
A	IPR005308	Orn/Lys/Arg decarboxylase, N-terminal	Domain
A	IPR036633	Orn/Lys/Arg decarboxylase, C-terminal domain superfamily	Homologous Superfamily
A	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A	IPR000310	Orn/Lys/Arg decarboxylase, major domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.