1C9S

CRYSTAL STRUCTURE OF A COMPLEX OF TRP RNA-BINDING ATTENUATION PROTEIN WITH A 53-BASE SINGLE STRANDED RNA CONTAINING ELEVEN GAG TRIPLETS SEPARATED BY AU DINUCLEOTIDES

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth A]	d1c9sa_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
C [auth B]	d1c9sb_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
D [auth C]	d1c9sc_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
E [auth D]	d1c9sd_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
F [auth E]	d1c9se_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
G [auth F]	d1c9sf_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
H [auth G]	d1c9sg_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
I [auth H]	d1c9sh_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
J [auth I]	d1c9si_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
K [auth J]	d1c9sj_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
L [auth K]	d1c9sk_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
M [auth L]	d1c9sl_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
N [auth M]	d1c9sm_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
O [auth N]	d1c9sn_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
P [auth O]	d1c9so_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
Q [auth P]	d1c9sp_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
R [auth Q]	d1c9sq_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
S [auth R]	d1c9sr_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
T [auth S]	d1c9ss_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
U [auth T]	d1c9st_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
V [auth U]	d1c9su_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
W [auth V]	d1c9sv_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
L [auth K]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
M [auth L]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
N [auth M]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
P [auth O]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
Q [auth P]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
R [auth Q]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
S [auth R]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
T [auth S]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
U [auth T]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
V [auth U]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
W [auth V]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	TrpBP	e1c9sA1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
C [auth B]	TrpBP	e1c9sB1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
D [auth C]	TrpBP	e1c9sC1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
E [auth D]	TrpBP	e1c9sD1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
F [auth E]	TrpBP	e1c9sE1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
G [auth F]	TrpBP	e1c9sF1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
H [auth G]	TrpBP	e1c9sG1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
I [auth H]	TrpBP	e1c9sH1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
J [auth I]	TrpBP	e1c9sI1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
K [auth J]	TrpBP	e1c9sJ1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
L [auth K]	TrpBP	e1c9sK1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
M [auth L]	TrpBP	e1c9sL1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
N [auth M]	TrpBP	e1c9sM1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
O [auth N]	TrpBP	e1c9sN1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
P [auth O]	TrpBP	e1c9sO1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
Q [auth P]	TrpBP	e1c9sP1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
R [auth Q]	TrpBP	e1c9sQ1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
S [auth R]	TrpBP	e1c9sR1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
T [auth S]	TrpBP	e1c9sS1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
U [auth T]	TrpBP	e1c9sT1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
V [auth U]	TrpBP	e1c9sU1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
W [auth V]	TrpBP	e1c9sV1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth A]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
C [auth B]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
D [auth C]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
E [auth D]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
F [auth E]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
G [auth F]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
H [auth G]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
I [auth H]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
J [auth I]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
K [auth J]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
L [auth K]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
M [auth L]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
N [auth M]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
O [auth N]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
P [auth O]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
Q [auth P]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
R [auth Q]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
S [auth R]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
T [auth S]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
U [auth T]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
V [auth U]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
W [auth V]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R], T [auth S], U [auth T], V [auth U], W [auth V]	PF02081	Tryptophan RNA-binding attenuator protein (TrpBP)	Tryptophan RNA-binding attenuator protein	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R], T [auth S], U [auth T], V [auth U], W [auth V]	TRP RNA-BINDING ATTENUATION PROTEIN	RNA binding binding organic cyclic compound binding nucleic acid binding identical protein binding protein binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	-
A [auth W]	SINGLE STRANDED RNA (55-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R], T [auth S], U [auth T], V [auth U], W [auth V]	IPR016031	Tryptophan RNA-binding attenuator protein-like domain superfamily	Homologous Superfamily
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R], T [auth S], U [auth T], V [auth U], W [auth V]	IPR000824	Transcription attenuation protein MtrB	Family
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R], T [auth S], U [auth T], V [auth U], W [auth V]	IPR023558	Tryptophan RNA-binding attenuator protein domain	Domain