1CVW | pdb_00001cvw

Crystal structure of active site-inhibited human coagulation factor VIIA (DES-GLA)

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth H]d1cvwh_ All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Coagulation factor VIIa human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
A [auth L]d1cvwl_ Small proteins Knottins (small inhibitors, toxins, lectins) EGF/Laminin EGF-type module Coagulation factor VIIa human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth H]SCOP2B SuperfamilyTrypsin-like serine proteases 8003776 3000114 SCOP2B (2022-06-29)
A [auth L]SCOP2B SuperfamilyEGF/Laminin-like 8039297 3000412 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth H]e1cvwH1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Peptidase_C4F:ECOD (20:10:01)
A [auth L]e1cvwL1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: EGF_CAF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth H]2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)
A [auth L]2.10.25.10 Mainly Beta Ribbon Laminin LamininCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth H]PF00089Trypsin (Trypsin)TrypsinDomain
A [auth L]PF14670Coagulation Factor Xa inhibitory site (FXa_inhibition)Coagulation Factor Xa inhibitory siteThis short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442 [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth H]COAGULATION FACTOR VIIA (HEAVY CHAIN) (DES-GLA)
A [auth L]COAGULATION FACTOR VIIA (LIGHT CHAIN) (DES-GLA)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth H]IPR018097EGF-like calcium-binding, conserved siteConserved Site
B [auth H]IPR018114Serine proteases, trypsin family, histidine active siteActive Site
B [auth H]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth H]IPR033116Serine proteases, trypsin family, serine active siteActive Site
B [auth H]IPR001254Serine proteases, trypsin domainDomain
B [auth H]IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
B [auth H]IPR001881EGF-like calcium-binding domainDomain
B [auth H]IPR012224Peptidase S1A, coagulation factor VII/IX/X/C/ZFamily
B [auth H]IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
B [auth H]IPR000742EGF-like domainDomain
B [auth H]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B [auth H]IPR050442Peptidase S1 family, coagulation factorsFamily
B [auth H]IPR017857Coagulation factor-like, Gla domain superfamilyHomologous Superfamily
B [auth H]IPR001314Peptidase S1A, chymotrypsin familyFamily
B [auth H]IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM
A [auth L]IPR018097EGF-like calcium-binding, conserved siteConserved Site
A [auth L]IPR018114Serine proteases, trypsin family, histidine active siteActive Site
A [auth L]IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth L]IPR033116Serine proteases, trypsin family, serine active siteActive Site
A [auth L]IPR001254Serine proteases, trypsin domainDomain
A [auth L]IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
A [auth L]IPR001881EGF-like calcium-binding domainDomain
A [auth L]IPR012224Peptidase S1A, coagulation factor VII/IX/X/C/ZFamily
A [auth L]IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
A [auth L]IPR000742EGF-like domainDomain
A [auth L]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A [auth L]IPR050442Peptidase S1 family, coagulation factorsFamily
A [auth L]IPR017857Coagulation factor-like, Gla domain superfamilyHomologous Superfamily
A [auth L]IPR001314Peptidase S1A, chymotrypsin familyFamily
A [auth L]IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth H]Pharos:  P08709
A [auth L]Pharos:  P08709