1E5D | pdb_00001e5d

RUBREDOXIN OXYGEN:OXIDOREDUCTASE (ROO) FROM ANAEROBE DESULFOVIBRIO GIGAS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1e5db1	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	Flavodoxin-related	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain	(Megalodesulfovibrio gigas ) [TaxId: 879 ],	SCOPe (2.08)
B	d1e5db2	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	ROO N-terminal domain-like	Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain	(Megalodesulfovibrio gigas ) [TaxId: 879 ],	SCOPe (2.08)
A	d1e5da1	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	Flavodoxin-related	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain	(Megalodesulfovibrio gigas ) [TaxId: 879 ],	SCOPe (2.08)
A	d1e5da2	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	ROO N-terminal domain-like	Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain	(Megalodesulfovibrio gigas ) [TaxId: 879 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Flavoproteins	8044083	3001217	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Metallo-hydrolase/oxidoreductase	8036870	3001057	SCOP2B (2022-06-29)
A	SCOP2 Family	ROO N-terminal domain-like	8024491	4002294	SCOP2 (2022-06-29)
A	SCOP2 Family	Flavodoxin-related	8031705	4003663	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Metallo-hydrolase/oxidoreductase	8036870	3001057	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Flavoproteins	8044083	3001217	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	CheD	e1e5dB1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: CheD	ECOD (develop294)
B	B12-binding	e1e5dB2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: B12-binding	ECOD (develop294)
A	ODP	e1e5dA1	A: few secondary structure elements	X: Metallo-hydrolase/oxidoreductase	H: Metallo-hydrolase/oxidoreductase	T: Metallo-hydrolase/oxidoreductase	F: ODP	ECOD (develop294)
A	Flavodoxin_1	e1e5dA2	A: alpha bundles	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: Flavoproteins	F: Flavodoxin_1	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
B	3.60.15.10	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
A	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
A	3.60.15.10	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	RUBREDOXIN\:OXYGEN OXIDOREDUCTASE	oxidoreductase activity catalytic activity FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding electron transfer activity cation binding oxidoreductase activity catalytic activity FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding electron transfer activity cation binding metal ion binding	cellular respiration energy derivation by oxidation of organic compounds respiratory electron transport chain electron transport chain metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR045761	ODP domain	Domain
A, B	IPR016440	Rubredoxin-oxygen oxidoreductase	Family
A, B	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Homologous Superfamily
A, B	IPR029039	Flavoprotein-like superfamily	Homologous Superfamily
A, B	IPR001279	Metallo-beta-lactamase	Domain
A, B	IPR008254	Flavodoxin/nitric oxide synthase	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.