1EUU
SIALIDASE OR NEURAMINIDASE, LARGE 68KD FORM
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1euua1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | E-set domains of sugar-utilizing enzymes | Sialidase, linker domain | (Micromonospora viridifaciens ) [TaxId: 1881 ], | SCOPe (2.08) |
A | d1euua2 | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | Galactose-binding domain | Sialidase, C-terminal domain | (Micromonospora viridifaciens ) [TaxId: 1881 ], | SCOPe (2.08) |
A | d1euua3 | All beta proteins | 6-bladed beta-propeller | Sialidases | Sialidases (neuraminidases) | Micromonospora sialidase, N-terminal domain | (Micromonospora viridifaciens ) [TaxId: 1881 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | galactose-binding domain-like | 8043343 | 3000087 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Sialidases | 8043344 | 3001607 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | E set domains | 8054893 | 3000070 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F5_F8_type_C_1 | e1euuA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: F5_F8_type_C_1 | ECOD (1.6) |
A | NPCBM_assoc_like | e1euuA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: NPCBM_assoc_like | ECOD (1.6) |
A | BNR_2 | e1euuA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: BNR_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.120.10.10 | Mainly Beta | 6 Propeller | Neuraminidase | CATH (4.3.0) | |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00754 | F5/8 type C domain (F5_F8_type_C) | F5/8 type C domain | This domain is also known as the discoidin (DS) domain family [1]. | Domain | |
PF13088 | BNR repeat-like domain (BNR_2) | BNR repeat-like domain | - | Repeat | |
PF10633 | NPCBM-associated, NEW3 domain of alpha-galactosidase (NPCBM_assoc) | NPCBM-associated, NEW3 domain of alpha-galactosidase | The English-language version of the first reference can be found on pages 388-399 of the above. This domain has been named NEW3 but its actual function is not known. It is found on proteins which are bacterial galactosidases [1]. The domain is associ ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018905 | Alpha-galactosidase, NEW3 domain | Domain | |
IPR006311 | Twin-arginine translocation pathway, signal sequence | Conserved Site | |
IPR011040 | Sialidase | Domain | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR036278 | Sialidase superfamily | Homologous Superfamily | |
IPR000421 | Coagulation factor 5/8, C-terminal domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR026856 | Sialidase family | Family |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
exo-alpha-sialidase (GH33 Family) M-CSA #835 | Exo sialidases (neuraminidases) catalyse the removal of terminal sialic acid residues in oligosaccharides, glycoproteins, glycolipids and synthetic substrates to release free sialic acid. This class function to release sialic acids for use as carbon and energy sources for non-pathogenic bacterium while in pathogenic microorganisms, sialidases have been suggested to be pathogenic factors. | Defined by 3 residues: ASP:A-50 [auth A-92]GLU:A-218 [auth A-260]TYR:A-328 [auth A-370] | EC: 3.2.1.18 (PDB Primary Data) |