1FG2 | pdb_00001fg2

CRYSTAL STRUCTURE OF THE LCMV PEPTIDIC EPITOPE GP33 IN COMPLEX WITH THE MURINE CLASS I MHC MOLECULE H-2DB


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Kd1fg2k_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) beta2-microglobulin house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Hd1fg2h_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) beta2-microglobulin house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ed1fg2e_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) beta2-microglobulin house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Bd1fg2b_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) beta2-microglobulin house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Jd1fg2j1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class I MHC, alpha-3 domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Jd1fg2j2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class I MHC, alpha-1 and alpha-2 domains house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Gd1fg2g1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class I MHC, alpha-3 domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Gd1fg2g2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class I MHC, alpha-1 and alpha-2 domains house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Dd1fg2d1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class I MHC, alpha-3 domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Dd1fg2d2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class I MHC, alpha-1 and alpha-2 domains house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ad1fg2a1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class I MHC, alpha-3 domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ad1fg2a2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class I MHC, alpha-1 and alpha-2 domains house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
KSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054613 3000071 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMHC antigen-recognition domain 8033048 3000521 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyMHC antigen-recognition domain 8033048 3000521 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054613 3000071 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054613 3000071 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMHC antigen-recognition domain 8033048 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8033048 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054613 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ke1fg2K1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
He1fg2H1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
Ee1fg2E1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
Be1fg2B1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
Je1fg2J1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
Je1fg2J2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: Anthrax_toxAF:ECOD (20:10:01)
Ge1fg2G1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
Ge1fg2G2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: Anthrax_toxAF:ECOD (20:10:01)
De1fg2D1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
De1fg2D2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: Anthrax_toxAF:ECOD (20:10:01)
Ae1fg2A1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
Ae1fg2A2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: Anthrax_toxAF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B, E, H, K
MH1-D1b (H2-D1b) B2M Mus musculus (house mouse) B2M*01 C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202609-0)
A, D, G, J
MH1-D1b (H2-D1b) I-ALPHA Mus musculus (house mouse) H2-D1b G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202609-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, E, H, K
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
A, D, G, J
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, F, I, L
LCMV PEPTIDIC EPITOPE GP33---
B, E, H, K
BETA-2 MICROGLOBULIN
A, D, G, J
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN-