1I6U | pdb_00001i6u

RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth B]	d1i6ub_	Alpha and beta proteins (a+b)	Ribosomal protein S8	Ribosomal protein S8	Ribosomal protein S8	Ribosomal protein S8	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
C [auth A]	d1i6ua_	Alpha and beta proteins (a+b)	Ribosomal protein S8	Ribosomal protein S8	Ribosomal protein S8	Ribosomal protein S8	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth B]	SCOP2B Superfamily	Ribosomal protein S8	8033701	3000709	SCOP2B (2022-06-29)
C [auth A]	SCOP2 Family	Ribosomal protein S8	8021321	4002027	SCOP2 (2022-06-29)
C [auth A]	SCOP2 Superfamily	Ribosomal protein S8	8033701	3000709	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth B]	HSP90	e1i6uB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: HSP90	ECOD (v294.1)
C [auth A]	Ribosomal_S8	e1i6uA1	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain	T: Ribosomal protein S8, N-terminal domain	F: Ribosomal_S8	ECOD (v294.1)
C [auth A]	Ribosomal_S8	e1i6uA2	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain	H: Ribosomal protein S8, C-terminal domain	T: Ribosomal protein S8, C-terminal domain	F: Ribosomal_S8	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth B]	3.30.1370.30	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (4.3.0)
D [auth B]	3.30.1490.10	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
C [auth A]	3.30.1370.30	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (4.3.0)
C [auth A]	3.30.1490.10	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D [auth B]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth A], D [auth B]	30S RIBOSOMAL PROTEIN S8P	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
A [auth C], B [auth D]	16S RRNA FRAGMENT	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D [auth B]	IPR000630	Small ribosomal subunit protein uS8	Family
C [auth A], D [auth B]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
C [auth A], D [auth B]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.