1I8D
CRYSTAL STRUCTURE OF RIBOFLAVIN SYNTHASE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1i8da1 | All beta proteins | Reductase/isomerase/elongation factor common domain | Riboflavin synthase domain-like | Riboflavin synthase | Riboflavin synthase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1i8db1 | All beta proteins | Reductase/isomerase/elongation factor common domain | Riboflavin synthase domain-like | Riboflavin synthase | Riboflavin synthase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
C | d1i8dc1 | All beta proteins | Reductase/isomerase/elongation factor common domain | Riboflavin synthase domain-like | Riboflavin synthase | Riboflavin synthase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Riboflavin synthase | 8021395 | 4003217 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Riboflavin synthase | 8021397 | 4003217 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Riboflavin synthase domain-like | 8033775 | 3001812 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Riboflavin synthase domain-like | 8033777 | 3001812 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Riboflavin synthase domain-like | 8033775 | 3001812 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Riboflavin synthase domain-like | 8033777 | 3001812 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Riboflavin synthase domain-like | 8033775 | 3001812 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Riboflavin synthase domain-like | 8033777 | 3001812 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Lum_binding | e1i8dA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Lum_binding | ECOD (1.6) |
B | Lum_binding | e1i8dB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Lum_binding | ECOD (1.6) |
C | Lum_binding | e1i8dC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Lum_binding | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.30.20 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
B | 2.40.30.20 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
C | 2.40.30.20 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00677 | Lumazine binding domain (Lum_binding) | Lumazine binding domain | This domain binds to derivatives of lumazine in some proteins. Some proteins have lost the residues involved in binding lumazine. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR017938 | Riboflavin synthase-like beta-barrel | Homologous Superfamily | |
IPR026017 | Lumazine-binding domain | Domain | |
IPR001783 | Lumazine-binding protein | Family | |
IPR023366 | ATP synthase subunit alpha, N-terminal domain-like superfamily | Homologous Superfamily |