Crystal Structure of Activated Ribulose-1,5-bisphosphate Carboxylase/oxygenase (Rubisco) from Green alga, Chlamydomonas reinhardtii Complexed with 2-Carboxyarabinitol-1,5-bisphosphate (2-CABP)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| BA [auth 6] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| D [auth J] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| F [auth K] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| FA [auth 8] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| H [auth L] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| J [auth M] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| Z [auth 5] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| X [auth 4] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| V [auth 3] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| T [auth 2] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| R [auth 1] | SCOP2 Family | RuBisCO, small subunit | 8069972 | 4001455 | SCOP2 (2022-06-29) |
| R [auth 1] | SCOP2 Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2 (2022-06-29) |
| P | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| N [auth O] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| L [auth N] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| DA [auth 7] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| B [auth I] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| AA [auth X] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| AA [auth X] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| G [auth D] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| G [auth D] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| I [auth E] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| I [auth E] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| K [auth F] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| K [auth F] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| S [auth T] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| S [auth T] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| W [auth V] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| W [auth V] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| Y [auth W] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| Y [auth W] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| Q [auth S] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| Q [auth S] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| O [auth H] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| O [auth H] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| M [auth G] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| M [auth G] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| EA [auth Z] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| EA [auth Z] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| E [auth C] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| E [auth C] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| CA [auth Y] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| CA [auth Y] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
| C [auth B] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
| C [auth B] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| BA [auth 6] | e1ir261 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| D [auth J] | e1ir2J1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| F [auth K] | e1ir2K1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| FA [auth 8] | e1ir281 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| H [auth L] | e1ir2L1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| J [auth M] | e1ir2M1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| Z [auth 5] | e1ir251 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| X [auth 4] | e1ir241 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| V [auth 3] | e1ir231 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| T [auth 2] | e1ir221 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| R [auth 1] | e1ir211 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| P | e1ir2P1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| N [auth O] | e1ir2O1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| L [auth N] | e1ir2N1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| DA [auth 7] | e1ir271 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| B [auth I] | e1ir2I1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Propep_M14 | F: | ECOD (20:10:01) | |
| A | e1ir2A1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| A | e1ir2A2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| AA [auth X] | e1ir2X1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| AA [auth X] | e1ir2X2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| G [auth D] | e1ir2D1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| G [auth D] | e1ir2D2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| I [auth E] | e1ir2E1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| I [auth E] | e1ir2E2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| K [auth F] | e1ir2F1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| K [auth F] | e1ir2F2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| S [auth T] | e1ir2T1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| S [auth T] | e1ir2T2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| W [auth V] | e1ir2V1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| W [auth V] | e1ir2V2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| Y [auth W] | e1ir2W1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| Y [auth W] | e1ir2W2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| U | e1ir2U1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| U | e1ir2U2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| Q [auth S] | e1ir2S1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| Q [auth S] | e1ir2S2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| O [auth H] | e1ir2H1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| O [auth H] | e1ir2H2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| M [auth G] | e1ir2G1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| M [auth G] | e1ir2G2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| EA [auth Z] | e1ir2Z1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| EA [auth Z] | e1ir2Z2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| E [auth C] | e1ir2C1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| E [auth C] | e1ir2C2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| CA [auth Y] | e1ir2Y1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| CA [auth Y] | e1ir2Y2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) | |
| C [auth B] | e1ir2B1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Fer4,DUF3470 | F: | ECOD (20:10:01) | |
| C [auth B] | e1ir2B2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Epimerase | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
| PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Small subunit of Rubisco | ||||
| Large subunit of Rubisco |
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| MME | Parent Component: MET :  AA0064 :  N-methyl-L-methionine MOD:00073 | |
| HYP | Parent Component: PRO :  AA0064 , AA0030 :  N-methyl-L-methionine MOD:00073 , 4-hydroxy-L-proline MOD:00039 | |
| KCX | Parent Component: LYS :  AA0064 , AA0030 | |
| SMC | Parent Component: CYS :  AA0064 , AA0030 , AA0234 :  N-methyl-L-methionine MOD:00073 , 4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 | |














