1JDB
CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIA COLI
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8036561 | 3000094 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8036563 | 3000094 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Carbamoyl phosphate synthetase, large subunit connection domain | 8038131 | 3000839 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | PreATP-grasp domain | 8044230 | 3001680 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Methylglyoxal synthase-like | 8044174 | 3001443 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | PreATP-grasp domain | 8044232 | 3001680 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8036561 | 3000094 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Carbamoyl phosphate synthetase, large subunit connection domain | 8038131 | 3000839 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Methylglyoxal synthase-like | 8044174 | 3001443 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | PreATP-grasp domain | 8044232 | 3001680 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | PreATP-grasp domain | 8044230 | 3001680 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8036563 | 3000094 | SCOP2B (2022-06-29) |
G [auth K] | SCOP2B Superfamily | PreATP-grasp domain | 8044232 | 3001680 | SCOP2B (2022-06-29) |
G [auth K] | SCOP2B Superfamily | PreATP-grasp domain | 8044230 | 3001680 | SCOP2B (2022-06-29) |
G [auth K] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8036563 | 3000094 | SCOP2B (2022-06-29) |
G [auth K] | SCOP2B Superfamily | Methylglyoxal synthase-like | 8044174 | 3001443 | SCOP2B (2022-06-29) |
G [auth K] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8036561 | 3000094 | SCOP2B (2022-06-29) |
G [auth K] | SCOP2B Superfamily | Carbamoyl phosphate synthetase, large subunit connection domain | 8038131 | 3000839 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Methylglyoxal synthase-like | 8044174 | 3001443 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | PreATP-grasp domain | 8044232 | 3001680 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8036563 | 3000094 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Carbamoyl phosphate synthetase, large subunit connection domain | 8038131 | 3000839 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8036561 | 3000094 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | PreATP-grasp domain | 8044230 | 3001680 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Carbamoyl phosphate synthetase, small subunit N-terminal domain | 8043909 | 3000949 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8044144 | 3001405 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Carbamoyl phosphate synthetase, small subunit N-terminal domain | 8043909 | 3000949 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8044144 | 3001405 | SCOP2B (2022-06-29) |
F [auth I] | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8044144 | 3001405 | SCOP2B (2022-06-29) |
F [auth I] | SCOP2B Superfamily | Carbamoyl phosphate synthetase, small subunit N-terminal domain | 8043909 | 3000949 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | Carbamoyl phosphate synthetase, small subunit N-terminal domain | 8043909 | 3000949 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8044144 | 3001405 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | CPSase_L_D3 | e1jdbB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: CPSase_L_D3 | ECOD (1.6) |
A [auth B] | ATP-grasp | e1jdbB2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
A [auth B] | carB | e1jdbB4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: carB | ECOD (1.6) |
A [auth B] | MGS | e1jdbB6 | A: a/b three-layered sandwiches | X: Methylglyoxal synthase-like (From Topology) | H: Methylglyoxal synthase-like (From Topology) | T: Methylglyoxal synthase-like | F: MGS | ECOD (1.6) |
E [auth H] | CPSase_L_D3 | e1jdbH1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: CPSase_L_D3 | ECOD (1.6) |
E [auth H] | ATP-grasp | e1jdbH2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
E [auth H] | carB | e1jdbH4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: carB | ECOD (1.6) |
E [auth H] | MGS | e1jdbH6 | A: a/b three-layered sandwiches | X: Methylglyoxal synthase-like (From Topology) | H: Methylglyoxal synthase-like (From Topology) | T: Methylglyoxal synthase-like | F: MGS | ECOD (1.6) |
G [auth K] | CPSase_L_D3 | e1jdbK1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: CPSase_L_D3 | ECOD (1.6) |
G [auth K] | ATP-grasp | e1jdbK2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
G [auth K] | carB | e1jdbK4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: carB | ECOD (1.6) |
G [auth K] | MGS | e1jdbK6 | A: a/b three-layered sandwiches | X: Methylglyoxal synthase-like (From Topology) | H: Methylglyoxal synthase-like (From Topology) | T: Methylglyoxal synthase-like | F: MGS | ECOD (1.6) |
C [auth E] | CPSase_L_D3 | e1jdbE1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: CPSase_L_D3 | ECOD (1.6) |
C [auth E] | ATP-grasp | e1jdbE2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
C [auth E] | carB | e1jdbE4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: carB | ECOD (1.6) |
C [auth E] | MGS | e1jdbE6 | A: a/b three-layered sandwiches | X: Methylglyoxal synthase-like (From Topology) | H: Methylglyoxal synthase-like (From Topology) | T: Methylglyoxal synthase-like | F: MGS | ECOD (1.6) |
B [auth C] | GATase | e1jdbC1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
B [auth C] | CPSase_sm_chain | e1jdbC2 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: CPSase_sm_chain | ECOD (1.6) |
D [auth F] | GATase | e1jdbF1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
D [auth F] | CPSase_sm_chain | e1jdbF2 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: CPSase_sm_chain | ECOD (1.6) |
F [auth I] | GATase | e1jdbI1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
F [auth I] | CPSase_sm_chain | e1jdbI2 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: CPSase_sm_chain | ECOD (1.6) |
H [auth L] | GATase | e1jdbL1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
H [auth L] | CPSase_sm_chain | e1jdbL2 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: CPSase_sm_chain | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], C [auth E], E [auth H], G [auth K] | PF02142 | MGS-like domain (MGS) | MGS-like domain | This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes ino ... | Domain |
A [auth B], C [auth E], E [auth H], G [auth K] | PF02786 | Carbamoyl-phosphate synthase L chain, ATP binding domain (CPSase_L_D2) | Carbamoyl-phosphate synthase L chain, ATP binding domain | Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The c ... | Domain |
A [auth B], C [auth E], E [auth H], G [auth K] | PF02787 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain (CPSase_L_D3) | Carbamoyl-phosphate synthetase large chain, oligomerisation domain | Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. | Domain |
B [auth C], D [auth F], F [auth I], H [auth L] | PF00117 | Glutamine amidotransferase class-I (GATase) | Glutamine amidotransferase class-I | - | Domain |
B [auth C], D [auth F], F [auth I], H [auth L] | PF00988 | Carbamoyl-phosphate synthase small chain, CPSase domain (CPSase_sm_chain) | Carbamoyl-phosphate synthase small chain, CPSase domain | The carbamoyl-phosphate synthase domain is in the amino terminus of protein. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both ... | Domain |
B [auth C], D [auth F], F [auth I], H [auth L] | PF07722 | Peptidase C26 (Peptidase_C26) | Peptidase C26 | These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to Pfam:PF00117, but contain extensions in four loops and at the C ... | Domain |