1JJK

Selenomethionine Substitution of Orotidine-5'-monophosphate Decarboxylase from E. coli Causes a Change in Crystal Contacts and Space Group


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1jjka_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd1jjkb_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd1jjkc_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Fd1jjkf_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Hd1jjkh_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Id1jjki_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Jd1jjkj_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Kd1jjkk_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ld1jjkl_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Nd1jjkn_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Od1jjko_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Pd1jjkp_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd1jjkd_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ed1jjke_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Gd1jjkg_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Md1jjkm_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRibulose-phoshate binding barrel 8043243 3000216 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AOMPdecasee1jjkA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
BOMPdecasee1jjkB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
COMPdecasee1jjkC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
FOMPdecasee1jjkF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
HOMPdecasee1jjkH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
IOMPdecasee1jjkI1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
JOMPdecasee1jjkJ1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
KOMPdecasee1jjkK1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
LOMPdecasee1jjkL1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
NOMPdecasee1jjkN1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
OOMPdecasee1jjkO1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
POMPdecasee1jjkP1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
DOMPdecasee1jjkD1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
EOMPdecasee1jjkE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
GOMPdecasee1jjkG1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
MOMPdecasee1jjkM1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00215Orotidine 5'-phosphate decarboxylase / HUMPS family (OMPdecase)Orotidine 5'-phosphate decarboxylase / HUMPS familyThis family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly ...This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to Pfam:PF00834.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
OROTIDINE 5'-PHOSPHATE DECARBOXYLASE

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR047596Orotidine 5'-phosphate decarboxylase, bacterialFamily
A, B, C, D, E
IPR013785Aldolase-type TIM barrelHomologous Superfamily
A, B, C, D, E
IPR001754Orotidine 5'-phosphate decarboxylase domainDomain
A, B, C, D, E
IPR014732Orotidine 5'-phosphate decarboxylaseFamily
A, B, C, D, E
IPR018089Orotidine 5'-phosphate decarboxylase, active siteActive Site
A, B, C, D, E
IPR011060Ribulose-phosphate binding barrelHomologous Superfamily