1JRA | pdb_00001jra

Crystal Structure of Erv2p

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1jraa_	All alpha proteins	Four-helical up-and-down bundle	FAD-dependent thiol oxidase	FAD-dependent thiol oxidase	Thiol oxidase Erv2p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
B	d1jrab_	All alpha proteins	Four-helical up-and-down bundle	FAD-dependent thiol oxidase	FAD-dependent thiol oxidase	Thiol oxidase Erv2p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
C	d1jrac_	All alpha proteins	Four-helical up-and-down bundle	FAD-dependent thiol oxidase	FAD-dependent thiol oxidase	Thiol oxidase Erv2p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
D	d1jrad_	All alpha proteins	Four-helical up-and-down bundle	FAD-dependent thiol oxidase	FAD-dependent thiol oxidase	Thiol oxidase Erv2p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	FAD-dependent thiol oxidase	8037271	3001745	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FAD-dependent thiol oxidase	8037271	3001745	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	FAD-dependent thiol oxidase	8037271	3001745	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	FAD-dependent thiol oxidase	8037271	3001745	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1jraA1	A: alpha bundles	X: EGF-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (develop294)
B		e1jraB1	A: alpha bundles	X: EGF-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (develop294)
C		e1jraC1	A: alpha bundles	X: EGF-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (develop294)
D		e1jraD1	A: alpha bundles	X: EGF-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.310	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	ERV/ALR sulfhydryl oxidase domain	CATH (4.3.0)
B	1.20.120.310	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	ERV/ALR sulfhydryl oxidase domain	CATH (4.3.0)
C	1.20.120.310	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	ERV/ALR sulfhydryl oxidase domain	CATH (4.3.0)
D	1.20.120.310	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	ERV/ALR sulfhydryl oxidase domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF04777	Erv1 / Alr family (Evr1_Alr)	Erv1 / Alr family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	ERV2 PROTEIN, MITOCHONDRIAL	oxidoreductase activity, acting on a sulfur group of donors disulfide oxidoreductase activity oxidoreductase activity oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor thiol oxidase activity catalytic activity catalytic activity, acting on a protein protein-disulfide reductase activity flavin-dependent sulfhydryl oxidase activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding oxidoreductase activity, acting on a sulfur group of donors disulfide oxidoreductase activity oxidoreductase activity oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor thiol oxidase activity catalytic activity catalytic activity, acting on a protein protein-disulfide reductase activity flavin-dependent sulfhydryl oxidase activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	regulation of biological process regulation of cellular process biological regulation primary metabolic process gene expression macromolecule biosynthetic process protein maturation regulation of protein folding in endoplasmic reticulum protein folding biosynthetic process regulation of protein folding cellular process metabolic process protein metabolic process regulation of biological process regulation of cellular process biological regulation primary metabolic process gene expression macromolecule biosynthetic process protein maturation regulation of protein folding in endoplasmic reticulum protein folding biosynthetic process regulation of protein folding cellular process metabolic process protein metabolic process macromolecule metabolic process protein folding in endoplasmic reticulum	membrane-bounded organelle storage vacuole intracellular anatomical structure lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle cellular anatomical structure organelle cytoplasm vacuolar membrane membrane lytic vacuole membrane membrane-bounded organelle storage vacuole intracellular anatomical structure lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle cellular anatomical structure organelle cytoplasm vacuolar membrane membrane lytic vacuole membrane bounding membrane of organelle organelle membrane fungal-type vacuole membrane endoplasmic reticulum endomembrane system organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036774	ERV/ALR sulfhydryl oxidase domain superfamily	Homologous Superfamily
A, B, C, D	IPR017905	ERV/ALR sulfhydryl oxidase domain	Domain
A, B, C, D	IPR039799	Sulfhydryl oxidase ALR/ERV	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.