1KHH | pdb_00001khh

Crystal Structure of Guanidinoacetate Methyltransferase from Rat Liver: A Template Structure of Protein Arginine Methyltransferase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1khhb_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	Guanidinoacetate methyltransferase	Guanidinoacetate methyltransferase	Norway rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
A	d1khha_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	Guanidinoacetate methyltransferase	Guanidinoacetate methyltransferase	Norway rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8043812	3000118	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8043812	3000118	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Aldedh	e1khhB1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)
A	Aldedh	e1khhA1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Guanidinoacetate methyltransferase	transferase activity, transferring one-carbon groups transferase activity methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity catalytic activity guanidinoacetate N-methyltransferase activity identical protein binding protein binding binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis multicellular organism development multicellular organismal process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis multicellular organism development multicellular organismal process embryonic organ development embryo development embryonic liver development methylation metabolic process cellular process oxoacid metabolic process carboxylic acid metabolic process modified amino acid metabolic process carbohydrate derivative metabolic process amino acid metabolic process primary metabolic process S-adenosylhomocysteine metabolic process organic acid metabolic process alpha-amino acid metabolic process nucleoside metabolic process L-amino acid metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process non-proteinogenic amino acid metabolic process nucleobase-containing small molecule metabolic process small molecule metabolic process sulfur compound metabolic process purine nucleoside metabolic process ribonucleoside metabolic process purine ribonucleoside metabolic process S-adenosylmethionine metabolic process monocarboxylic acid biosynthetic process creatine metabolic process small molecule biosynthetic process creatine biosynthetic process modified amino acid biosynthetic process organic acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process monocarboxylic acid metabolic process regulation of multicellular organism growth regulation of biological process regulation of growth regulation of developmental growth regulation of developmental process developmental growth growth biological regulation multicellular organism growth regulation of multicellular organismal process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B	IPR051038	RMT2/GAMT Methyltransferase	Family
A, B	IPR026480	Arginine N-methyltransferase 2-like domain	Domain
A, B	IPR016550	Guanidinoacetate N-methyltransferase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.