1M0W | pdb_00001m0w

Yeast Glutathione Synthase Bound to gamma-glutamyl-cysteine, AMP-PNP and 2 Magnesium Ions

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1m0wa1	Alpha and beta proteins (a/b)	PreATP-grasp domain	PreATP-grasp domain	Eukaryotic glutathione synthetase, substrate-binding domain	Eukaryotic glutathione synthetase, substrate-binding domain	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
A	d1m0wa2	Alpha and beta proteins (a+b)	ATP-grasp	Glutathione synthetase ATP-binding domain-like	Eukaryotic glutathione synthetase ATP-binding domain	Eukaryotic glutathione synthetase ATP-binding domain	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
B	d1m0wb1	Alpha and beta proteins (a/b)	PreATP-grasp domain	PreATP-grasp domain	Eukaryotic glutathione synthetase, substrate-binding domain	Eukaryotic glutathione synthetase, substrate-binding domain	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
B	d1m0wb2	Alpha and beta proteins (a+b)	ATP-grasp	Glutathione synthetase ATP-binding domain-like	Eukaryotic glutathione synthetase ATP-binding domain	Eukaryotic glutathione synthetase ATP-binding domain	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Eukaryotic glutathione synthetase, substrate-binding domain	8030784	4003877	SCOP2 (2022-06-29)
A	SCOP2 Family	Eukaryotic glutathione synthetase ATP-binding domain	8030785	4002073	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PreATP-grasp domain	8043163	3001680	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Glutathione synthetase ATP-binding domain-like	8043164	3000094	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Glutathione synthetase ATP-binding domain-like	8043164	3000094	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PreATP-grasp domain	8043163	3001680	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Glutathione synthetase ATP-binding domain-like	8043164	3000094	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1m0wA1	A: Protein kinase/SAICAR synthase/ATP-grasp	X: Protein kinase/SAICAR synthase/ATP-grasp	H: ATP-grasp	T: GSH_synth_ATP	F:	ECOD (20:10:01)
A		e1m0wA2	A: Rossmann-like	X: Rossmann-related	H: PreATP-grasp domain	T: GSH_synthase	F:	ECOD (20:10:01)
B		e1m0wB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Hexapep,Acetyltransf_11	F:	ECOD (20:10:01)
B		e1m0wB2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: GBP	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1490.80	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
A	3.30.470.20	Alpha Beta	2-Layer Sandwich	D-amino Acid Aminotransferase	Chain A, domain 1	CATH (4.3.0)
A	1.10.1080.10	Mainly Alpha	Orthogonal Bundle	Glutathione Synthetase	Chain A, domain 3	CATH (4.3.0)
A	3.40.50.1760	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glutathione synthase, substrate-binding domain superfamily, eukaryotic	CATH (4.3.0)
A	3.30.1490.50	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
B	3.30.1490.80	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
B	3.30.470.20	Alpha Beta	2-Layer Sandwich	D-amino Acid Aminotransferase	Chain A, domain 1	CATH (4.3.0)
B	1.10.1080.10	Mainly Alpha	Orthogonal Bundle	Glutathione Synthetase	Chain A, domain 3	CATH (4.3.0)
B	3.40.50.1760	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glutathione synthase, substrate-binding domain superfamily, eukaryotic	CATH (4.3.0)
B	3.30.1490.50	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03917	Eukaryotic glutathione synthase, ATP binding domain (GSH_synth_ATP)	Eukaryotic glutathione synthase, ATP binding domain		Domain
A, B	PF03199	Eukaryotic glutathione synthase (GSH_synthase)	Eukaryotic glutathione synthase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	glutathione synthetase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding identical protein binding protein binding protein homodimerization activity protein dimerization activity modified amino acid binding oligopeptide binding glutathione binding sulfur compound binding acid-amino acid ligase activity glutathione synthase activity non-ribosomal peptide synthetase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity	glutathione metabolic process modified amino acid biosynthetic process modified amino acid metabolic process sulfur compound biosynthetic process peptide biosynthetic process biosynthetic process glutathione biosynthetic process metabolic process cellular process sulfur compound metabolic process nonribosomal peptide biosynthetic process peptide metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR014709	Glutathione synthase, C-terminal, eukaryotic	Homologous Superfamily
A, B	IPR005615	Glutathione synthase	Family
A, B	IPR016185	Pre-ATP-grasp domain superfamily	Homologous Superfamily
A, B	IPR014042	Glutathione synthase, alpha-helical	Homologous Superfamily
A, B	IPR037013	Glutathione synthase, substrate-binding domain superfamily	Homologous Superfamily
A, B	IPR014049	Glutathione synthase, N-terminal, eukaryotic	Homologous Superfamily
A, B	IPR004887	Glutathione synthase, substrate-binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.