1M8Q | pdb_00001m8q

Molecular Models of Averaged Rigor Crossbridges from Tomograms of Insect Flight Muscle


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Z [auth 5]d1m8q5_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
Y [auth 4]d1m8q4_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
X [auth 3]d1m8q3_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
W [auth 2]d1m8q2_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
V [auth 1]d1m8q1_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
U [auth 0]d1m8q0_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
T [auth Z]d1m8qz_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
S [auth Y]d1m8qy_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
R [auth X]d1m8qx_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
Q [auth W]d1m8qw_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
P [auth V]d1m8qv_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
O [auth 9]d1m8q9_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
N [auth 8]d1m8q8_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
M [auth 7]d1m8q7_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
L [auth R]d1m8qr_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Id1m8qi_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Fd1m8qf_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Cd1m8qc_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
K [auth Q]d1m8qq_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Hd1m8qh_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Ed1m8qe_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Bd1m8qb_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
J [auth P]d1m8qp_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Gd1m8qg_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Dd1m8qd_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Ad1m8qa_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth 5]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
Z [auth 5]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
Y [auth 4]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
Y [auth 4]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
X [auth 3]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
X [auth 3]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
W [auth 2]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
W [auth 2]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
V [auth 1]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
V [auth 1]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
U [auth 0]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
U [auth 0]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
T [auth Z]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
T [auth Z]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
S [auth Y]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
S [auth Y]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
R [auth X]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
R [auth X]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
Q [auth W]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
Q [auth W]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
P [auth V]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
P [auth V]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
O [auth 9]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
O [auth 9]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
N [auth 8]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
N [auth 8]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
M [auth 7]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
M [auth 7]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
L [auth R]SCOP2B SuperfamilyEF-hand 8037365 3001983 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyEF-hand 8037365 3001983 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyEF-hand 8037365 3001983 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyEF-hand 8037365 3001983 SCOP2B (2022-06-29)
K [auth Q]SCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth 5]Phenol_Hydroxe1m8q53 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
Y [auth 4]Phenol_Hydroxe1m8q43 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
X [auth 3]Phenol_Hydroxe1m8q33 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
W [auth 2]Phenol_Hydroxe1m8q23 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
V [auth 1]Phenol_Hydroxe1m8q13 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
U [auth 0]Flavi_glycoprote1m8q01 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (develop294)
T [auth Z]Phenol_Hydroxe1m8qZ3 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
S [auth Y]Phenol_Hydroxe1m8qY3 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
R [auth X]Phenol_Hydroxe1m8qX3 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
Q [auth W]Phenol_Hydroxe1m8qW3 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
P [auth V]Phenol_Hydroxe1m8qV3 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
O [auth 9]Flavi_glycoprote1m8q91 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (develop294)
N [auth 8]Phenol_Hydroxe1m8q83 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
M [auth 7]Phenol_Hydroxe1m8q73 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Phenol_HydroxECOD (develop294)
L [auth R]EF-hand_1, EF-hand_5, EF-hand_7e1m8qR4 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: EF-hand_1, EF-hand_5, EF-hand_7ECOD (develop294)
L [auth R]EF-hand_1, EF-hand_7e1m8qR2 A: alpha bundlesX: P-loop domains-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: EF-hand_1, EF-hand_7ECOD (develop294)
IEF-hand_1, EF-hand_5, EF-hand_7e1m8qI4 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: EF-hand_1, EF-hand_5, EF-hand_7ECOD (develop294)
IEF-hand_1, EF-hand_7e1m8qI2 A: alpha bundlesX: P-loop domains-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: EF-hand_1, EF-hand_7ECOD (develop294)
FEF-hand_1, EF-hand_5, EF-hand_7e1m8qF4 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: EF-hand_1, EF-hand_5, EF-hand_7ECOD (develop294)
FEF-hand_1, EF-hand_7e1m8qF2 A: alpha bundlesX: P-loop domains-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: EF-hand_1, EF-hand_7ECOD (develop294)
CEF-hand_1, EF-hand_5, EF-hand_7e1m8qC4 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: EF-hand_1, EF-hand_5, EF-hand_7ECOD (develop294)
CEF-hand_1, EF-hand_7e1m8qC2 A: alpha bundlesX: P-loop domains-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: EF-hand_1, EF-hand_7ECOD (develop294)
K [auth Q]Flavi_glycoprote1m8qQ1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (develop294)
HFlavi_glycoprote1m8qH1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (develop294)
EFlavi_glycoprote1m8qE1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (develop294)
BFlavi_glycoprote1m8qB1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (develop294)
J [auth P]HI0933_like_1ste1m8qP1 A: alpha bundlesX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: HI0933_like_1stECOD (develop294)
GHI0933_like_1ste1m8qG1 A: alpha bundlesX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: HI0933_like_1stECOD (develop294)
DHI0933_like_1ste1m8qD1 A: alpha bundlesX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: HI0933_like_1stECOD (develop294)
AHI0933_like_1ste1m8qA1 A: alpha bundlesX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: HI0933_like_1stECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00022Actin (Actin)Actin- Family
A,
D,
G,
J [auth P]
PF02736Myosin N-terminal SH3-like domain (Myosin_N)Myosin N-terminal SH3-like domainThis domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown. Domain
A,
D,
G,
J [auth P]
PF00063Myosin head (motor domain) (Myosin_head)Myosin head (motor domain)Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Skeletal muscle Actin
C,
F,
I,
L [auth R]
Skeletal muscle Myosin II Essential Light Chain
B,
E,
H,
K [auth Q]
Skeletal muscle Myosin II Regulatory Light Chain
A,
D,
G,
J [auth P]
Skeletal muscle Myosin II

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004001Actin, conserved siteConserved Site
IPR004000Actin familyFamily
C,
F,
I,
L [auth R]
IPR050230Calmodulin/Myosin light chain/Troponin C-likeFamily
C,
F,
I,
L [auth R]
IPR002048EF-hand domainDomain
C,
F,
I,
L [auth R]
IPR011992EF-hand domain pairHomologous Superfamily
B,
E,
H,
K [auth Q]
IPR018247EF-Hand 1, calcium-binding siteBinding Site
B,
E,
H,
K [auth Q]
IPR002048EF-hand domainDomain
B,
E,
H,
K [auth Q]
IPR011992EF-hand domain pairHomologous Superfamily
B,
E,
H,
K [auth Q]
IPR050403Myosin regulatory light chainFamily
A,
D,
G,
J [auth P]
IPR036961Kinesin motor domain superfamilyHomologous Superfamily
A,
D,
G,
J [auth P]
IPR004009Myosin, SH3 domainDomain
A,
D,
G,
J [auth P]
IPR014751DNA repair protein XRCC4-like, C-terminalHomologous Superfamily
A,
D,
G,
J [auth P]
IPR001609Myosin head, motor domain-likeDomain
A,
D,
G,
J [auth P]
IPR002928Myosin tailDomain
A,
D,
G,
J [auth P]
IPR008989Myosin S1 fragment, N-terminalHomologous Superfamily
A,
D,
G,
J [auth P]
IPR000048IQ motif, EF-hand binding siteBinding Site
A,
D,
G,
J [auth P]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A,
D,
G,
J [auth P]
MLY Parent Component: LYS

RESIDAA0075

PSI-MOD :  N6,N6-dimethyl-L-lysine MOD:00084