1ML5 | pdb_00001ml5

Structure of the E. coli ribosomal termination complex with release factor 2


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
L [auth J]d1ml5j_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
M [auth K]d1ml5k_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
T [auth R]d1ml5r_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
V [auth T]d1ml5t_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
X [auth V]d1ml5v_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Y [auth W]d1ml5w_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
I [auth G]d1ml5g_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
H [auth F]d1ml5f_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
G [auth E]d1ml5e_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
F [auth Z]d1ml5z_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
AA [auth c]d1ml5c_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Z [auth X]d1ml5x_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
W [auth U]d1ml5u_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
U [auth S]d1ml5s_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
S [auth Q]d1ml5q_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
R [auth P]d1ml5p_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Q [auth O]d1ml5o_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
P [auth N]d1ml5n_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
O [auth M]d1ml5m_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
N [auth L]d1ml5l_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
K [auth I]d1ml5i_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
J [auth H]d1ml5h_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth J]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
V [auth T]SCOP2B SuperfamilyNucleic acid-binding proteins 8044026 3000135 SCOP2B (2022-06-29)
X [auth V]SCOP2B SuperfamilyRibosomal protein S19 8044027 3000686 SCOP2B (2022-06-29)
Y [auth W]SCOP2B SuperfamilyRibosomal protein S20 8044029 3001362 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8044014 3001473 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II) 8044011 3001043 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyRibosomal protein S3 C-terminal domain 8044012 3001053 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8044010 3001397 SCOP2B (2022-06-29)
F [auth Z]SCOP2B SuperfamilyPeptidyl-tRNA hydrolase domain-like 8054401 3001421 SCOP2B (2022-06-29)
F [auth Z]SCOP2B SuperfamilyRNA-binding domain, RBD 8054399 3000110 SCOP2B (2022-06-29)
F [auth Z]SCOP2B SuperfamilyRelease factor N-terminal domain-like 8038812 3001827 SCOP2B (2022-06-29)
SA [auth x]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
RA [auth w]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
QA [auth v]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
NA [auth s]SCOP2B SuperfamilyRibosomal protein L22 8033220 3001078 SCOP2B (2022-06-29)
MA [auth r]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8032651 3000068 SCOP2B (2022-06-29)
LA [auth q]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
IA [auth n]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
GA [auth l]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8032961 3001186 SCOP2B (2022-06-29)
GA [auth l]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like 8032963 3000950 SCOP2B (2022-06-29)
FA [auth h]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
FA [auth h]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
BA [auth d]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8041672 3000334 SCOP2B (2022-06-29)
BA [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins 8041953 3000135 SCOP2B (2022-06-29)
AA [auth c]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like 8065348 3001911 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyRibosomal protein S18 8044028 3001191 SCOP2B (2022-06-29)
U [auth S]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052585 3000068 SCOP2B (2022-06-29)
R [auth P]SCOP2B SuperfamilyS13-like H2TH domain 8003708 3000053 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilyNucleic acid-binding proteins 8044021 3000135 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyTranslational machinery components 8044020 3000571 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyRibosomal protein S10 8044019 3001336 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8037678 3000100 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilydsRNA-binding domain-like 8044017 3000985 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8044015 3000100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth J]e1ml5J1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
M [auth K]e1ml5K1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
T [auth R]e1ml5R1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
V [auth T]e1ml5T1 A: beta-propeller-likeX: beta-propellerH: Nucleic acid-binding proteinT: CellulaseF:ECOD (20:10:01)
X [auth V]e1ml5V1 A: beta-propeller-likeX: beta-propellerH: Nucleic acid-binding proteinT: CellulaseF:ECOD (20:10:01)
Y [auth W]e1ml5W1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
HA [auth m]e1ml5m1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
JA [auth o]e1ml5o1 A: Ribonuclease H-likeX: Ribonuclease H-likeH: Ribonuclease H-likeT: PGIF:ECOD (20:10:01)
I [auth G]e1ml5G1 A: beta-propeller-likeX: beta-propellerH: Nucleic acid-binding proteinT: CellulaseF:ECOD (20:10:01)
H [auth F]e1ml5F1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
G [auth E]e1ml5E1 A: Immunoglobulin-like beta-sandwichX: Immunoglobulin-relatedH: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeT: FlaF_Ig-likeF:ECOD (20:10:01)
F [auth Z]e1ml5Z1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
SA [auth x]e1ml5x1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
RA [auth w]e1ml5w1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
QA [auth v]e1ml5v1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
PA [auth u]e1ml5u1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
OA [auth t]e1ml5t1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
NA [auth s]e1ml5s1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
MA [auth r]e1ml5r1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
LA [auth q]e1ml5q1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
KA [auth p]e1ml5p1 A: Cytochrome P450X: Cytochrome P450H: Cytochrome P450T: AP_endonuc_2F:ECOD (20:10:01)
IA [auth n]e1ml5n1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
GA [auth l]e1ml5l1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
FA [auth h]e1ml5h1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
EA [auth g]e1ml5g1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: LonginF:ECOD (20:10:01)
DA [auth f]e1ml5f1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
CA [auth e]e1ml5e1 A: HTHX: HTHH: winged helix domainT: Ribosomal_L3F:ECOD (20:10:01)
BA [auth d]e1ml5d1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: UvrB_interF:ECOD (20:10:01)
AA [auth c]e1ml5c1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
W [auth U]e1ml5U1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
U [auth S]e1ml5S1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
S [auth Q]e1ml5Q1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
R [auth P]e1ml5P1 A: beta-propeller-likeX: beta-propellerH: Nucleic acid-binding proteinT: CellulaseF:ECOD (20:10:01)
Q [auth O]e1ml5O1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
P [auth N]e1ml5N1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
O [auth M]e1ml5M1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
N [auth L]e1ml5L1 A: Immunoglobulin-like beta-sandwichX: Immunoglobulin-relatedH: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeT: FlaF_Ig-likeF:ECOD (20:10:01)
K [auth I]e1ml5I1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
J [auth H]e1ml5H1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
L [auth J]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
M [auth K]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
T [auth R]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
V [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
V [auth T]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
X [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
X [auth V]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
Y [auth W]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
I [auth G]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
I [auth G]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
I [auth G]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
I [auth G]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
H [auth F]PF07650KH domain (KH_2)KH domainDomain
H [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
H [auth F]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
G [auth E]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
G [auth E]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
F [auth Z]PF03462PCRF domain (PCRF)PCRF domainThis domain is found in peptide chain release factors. Domain
F [auth Z]PF00472RF-1 domain (RF-1)RF-1 domainThis domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domai ...This domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Domain
Z [auth X]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
Z [auth X]PF1707030S ribosomal protein Thx (Thx)30S ribosomal protein Thx- Family
W [auth U]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
W [auth U]PF00467KOW motif (KOW)KOW motif- Family
U [auth S]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
U [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
S [auth Q]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
R [auth P]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
R [auth P]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
Q [auth O]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
Q [auth O]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
P [auth N]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
P [auth N]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
O [auth M]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
O [auth M]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
N [auth L]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
N [auth L]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
N [auth L]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
K [auth I]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
J [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
J [auth H]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
J [auth H]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
T-RNA(PHE)---
A- AND P-SITE MESSENGER RNA CODONS---
E [auth b]50S 5S RIBOSOMAL RNA---
L [auth J]30S RIBOSOMAL PROTEIN S7
M [auth K]30S RIBOSOMAL PROTEIN S8
T [auth R]30S RIBOSOMAL PROTEIN S15
V [auth T]30S RIBOSOMAL PROTEIN S17
X [auth V]30S RIBOSOMAL PROTEIN S19
Y [auth W]30S RIBOSOMAL PROTEIN S20
HA [auth m]50S RIBOSOMAL PROTEIN L13
JA [auth o]50S RIBOSOMAL PROTEIN L15
I [auth G]30S RIBOSOMAL PROTEIN S4
H [auth F]30S RIBOSOMAL PROTEIN S3
G [auth E]30S RIBOSOMAL PROTEIN S2
F [auth Z]Peptide chain release factor 2
SA [auth x]50S RIBOSOMAL PROTEIN L30
RA [auth w]50S RIBOSOMAL PROTEIN L29
QA [auth v]50S RIBOSOMAL PROTEIN L25
PA [auth u]50S RIBOSOMAL PROTEIN L24
OA [auth t]50S RIBOSOMAL PROTEIN L23
NA [auth s]50S RIBOSOMAL PROTEIN L22
D [auth a]50S 23S RIBOSOMAL RNA---
MA [auth r]50S RIBOSOMAL PROTEIN L19
LA [auth q]50S RIBOSOMAL PROTEIN L18
KA [auth p]50S RIBOSOMAL PROTEIN L16
IA [auth n]50S RIBOSOMAL PROTEIN L14
GA [auth l]50S RIBOSOMAL PROTEIN L11
FA [auth h]50S RIBOSOMAL PROTEIN L6
EA [auth g]50S RIBOSOMAL PROTEIN L5
DA [auth f]50S RIBOSOMAL PROTEIN L4
CA [auth e]50S RIBOSOMAL PROTEIN L3
BA [auth d]50S RIBOSOMAL PROTEIN L2
AA [auth c]50S RIBOSOMAL PROTEIN L1
Z [auth X]30S RIBOSOMAL PROTEIN THX -
W [auth U]30S RIBOSOMAL PROTEIN S18
U [auth S]30S RIBOSOMAL PROTEIN S16
S [auth Q]30S RIBOSOMAL PROTEIN S14
R [auth P]30S RIBOSOMAL PROTEIN S13
Q [auth O]30S RIBOSOMAL PROTEIN S12
P [auth N]30S RIBOSOMAL PROTEIN S11
O [auth M]30S RIBOSOMAL PROTEIN S10
N [auth L]30S RIBOSOMAL PROTEIN S9
K [auth I]30S RIBOSOMAL PROTEIN S6
J [auth H]30S RIBOSOMAL PROTEIN S5
30S 16S RIBOSOMAL RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth J]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
L [auth J]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
L [auth J]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
L [auth J]IPR000235Small ribosomal subunit protein uS7Family
L [auth J]IPR023798Small ribosomal subunit protein uS7 domainDomain
M [auth K]IPR000630Small ribosomal subunit protein uS8Family
M [auth K]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
M [auth K]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
T [auth R]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
T [auth R]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
T [auth R]IPR000589Small ribosomal subunit protein uS15Family
V [auth T]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
V [auth T]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
V [auth T]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
V [auth T]IPR000266Small ribosomal subunit protein uS17Family
X [auth V]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
X [auth V]IPR002222Small ribosomal subunit protein uS19Family
X [auth V]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
X [auth V]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Y [auth W]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
Y [auth W]IPR002583Small ribosomal subunit protein bS20Family
HA [auth m]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
HA [auth m]IPR005822Large ribosomal subunit protein uL13Family
HA [auth m]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
HA [auth m]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
JA [auth o]IPR021131Large ribosomal subunit protein uL15/eL18Domain
JA [auth o]IPR030878Large ribosomal subunit protein uL15Family
JA [auth o]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
JA [auth o]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
JA [auth o]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
I [auth G]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
I [auth G]IPR002942RNA-binding S4 domainDomain
I [auth G]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
I [auth G]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
I [auth G]IPR022801Small ribosomal subunit protein uS4Family
I [auth G]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
H [auth F]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
H [auth F]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
H [auth F]IPR057258Small ribosomal subunit protein uS3Family
H [auth F]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
H [auth F]IPR004087K Homology domainDomain
H [auth F]IPR004044K Homology domain, type 2Domain
H [auth F]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
H [auth F]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
H [auth F]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
G [auth E]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
G [auth E]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
G [auth E]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
G [auth E]IPR001865Small ribosomal subunit protein uS2Family
F [auth Z]IPR004374Peptide chain release factor 2Family
F [auth Z]IPR000352Peptide chain release factor class IDomain
F [auth Z]IPR045853Peptide chain release factor class I superfamilyHomologous Superfamily
F [auth Z]IPR005139Peptide chain release factorDomain
SA [auth x]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
SA [auth x]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
SA [auth x]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
SA [auth x]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
RA [auth w]IPR050063Universal ribosomal protein uL29Family
RA [auth w]IPR001854Large ribosomal subunit protein uL29Family
RA [auth w]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
RA [auth w]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
QA [auth v]IPR020055Ribosomal protein bL25, short-formFamily
QA [auth v]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
QA [auth v]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
QA [auth v]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
QA [auth v]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
PA [auth u]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
PA [auth u]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
PA [auth u]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PA [auth u]IPR003256Large ribosomal subunit protein uL24Family
PA [auth u]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
PA [auth u]IPR005824KOWDomain
PA [auth u]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
OA [auth t]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
OA [auth t]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
OA [auth t]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
OA [auth t]IPR013025Large ribosomal subunit protein uL23-likeFamily
NA [auth s]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
NA [auth s]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
NA [auth s]IPR001063Large ribosomal subunit protein uL22Family
NA [auth s]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
NA [auth s]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
MA [auth r]IPR011017TRASH domainDomain
MA [auth r]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
MA [auth r]IPR055345Large ribosomal subunit protein eL24-like, archaeaFamily
MA [auth r]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
MA [auth r]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
LA [auth q]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
LA [auth q]IPR057268Large ribosomal subunit protein uL18Family
LA [auth q]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
KA [auth p]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
KA [auth p]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
KA [auth p]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
KA [auth p]IPR022981Large ribosomal subunit protein uL16, archaeaFamily
KA [auth p]IPR016180Large ribosomal subunit protein uL16 domainDomain
KA [auth p]IPR047873Large ribosomal subunit protein uL16Family
IA [auth n]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IA [auth n]IPR000218Large ribosomal subunit protein uL14Family
IA [auth n]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IA [auth n]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
GA [auth l]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
GA [auth l]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
GA [auth l]IPR000911Ribosomal protein uL11Family
GA [auth l]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
GA [auth l]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
GA [auth l]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
GA [auth l]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
FA [auth h]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
FA [auth h]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
FA [auth h]IPR000702Large ribosomal subunit protein uL6-likeFamily
FA [auth h]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
FA [auth h]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
EA [auth g]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
EA [auth g]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
EA [auth g]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
EA [auth g]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
EA [auth g]IPR002132Large ribosomal subunit protein uL5Family
EA [auth g]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
DA [auth f]IPR019970Large ribosomal subunit protein uL4, archaeaFamily
DA [auth f]IPR002136Large ribosomal subunit protein uL4Family
DA [auth f]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
DA [auth f]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
DA [auth f]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
CA [auth e]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
CA [auth e]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
CA [auth e]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
CA [auth e]IPR000597Large ribosomal subunit protein uL3Family
BA [auth d]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
BA [auth d]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
BA [auth d]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth d]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth d]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
BA [auth d]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BA [auth d]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
BA [auth d]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
BA [auth d]IPR002171Large ribosomal subunit protein uL2Family
AA [auth c]IPR005878Large ribosomal subunit protein uL1, bacteriaFamily
AA [auth c]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
AA [auth c]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
AA [auth c]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
AA [auth c]IPR002143Large ribosomal subunit protein uL1Family
AA [auth c]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
Z [auth X]IPR030826Small ribosomal subunit protein bTHX/bTHXc/bTHXmFamily
Z [auth X]IPR031414Small ribosomal subunit protein bTHXFamily
W [auth U]IPR001648Small ribosomal subunit protein bS18Family
W [auth U]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
W [auth U]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
U [auth S]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
U [auth S]IPR000307Small ribosomal subunit protein bS16Family
U [auth S]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
S [auth Q]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
S [auth Q]IPR001209Small ribosomal subunit protein uS14Family
S [auth Q]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
S [auth Q]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
R [auth P]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
R [auth P]IPR001892Small ribosomal subunit protein uS13Family
R [auth P]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
R [auth P]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
R [auth P]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
Q [auth O]IPR006032Small ribosomal subunit protein uS12Family
Q [auth O]IPR005679Ribosomal protein uS12, bacteriaFamily
Q [auth O]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth N]IPR001971Small ribosomal subunit protein uS11Family
P [auth N]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
P [auth N]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
P [auth N]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
O [auth M]IPR001848Small ribosomal subunit protein uS10Family
O [auth M]IPR027486Small ribosomal subunit protein uS10 domainDomain
O [auth M]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
O [auth M]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
N [auth L]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
N [auth L]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
N [auth L]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
N [auth L]IPR000754Small ribosomal subunit protein uS9Family
N [auth L]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
K [auth I]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
K [auth I]IPR000529Small ribosomal subunit protein bS6Family
K [auth I]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
K [auth I]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
K [auth I]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
J [auth H]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
J [auth H]IPR000851Small ribosomal subunit protein uS5Family
J [auth H]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
J [auth H]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
J [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
J [auth H]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
J [auth H]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily