1N7Z | pdb_00001n7z

Structure and location of gene product 8 in the bacteriophage T4 baseplate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1n7zd_	All beta proteins	Baseplate structural protein gp8	Baseplate structural protein gp8	Baseplate structural protein gp8	Baseplate structural protein gp8	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
C	d1n7zc_	All beta proteins	Baseplate structural protein gp8	Baseplate structural protein gp8	Baseplate structural protein gp8	Baseplate structural protein gp8	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
B	d1n7zb_	All beta proteins	Baseplate structural protein gp8	Baseplate structural protein gp8	Baseplate structural protein gp8	Baseplate structural protein gp8	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
A	d1n7za_	All beta proteins	Baseplate structural protein gp8	Baseplate structural protein gp8	Baseplate structural protein gp8	Baseplate structural protein gp8	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Baseplate structural protein gp8	8033088	3002009	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Baseplate structural protein gp8	8033088	3002009	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Baseplate structural protein gp8	8033088	3002009	SCOP2B (2022-06-29)
A	SCOP2 Family	Baseplate structural protein gp8	8020708	4003977	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Baseplate structural protein gp8	8033088	3002009	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Malic_M	e1n7zD1	A: alpha bundles	X: Ten stranded beta/alpha barrel	H: HTH	T: Ribbon-helix-helix	F: Malic_M	ECOD (develop294)
C	Malic_M	e1n7zC1	A: alpha bundles	X: Ten stranded beta/alpha barrel	H: HTH	T: Ribbon-helix-helix	F: Malic_M	ECOD (develop294)
B	Malic_M	e1n7zB1	A: alpha bundles	X: Ten stranded beta/alpha barrel	H: HTH	T: Ribbon-helix-helix	F: Malic_M	ECOD (develop294)
A	Phage-Gp8	e1n7zA1	A: alpha bundles	X: Flavodoxin-like	H: Baseplate structural protein gp8	T: Baseplate structural protein gp8	F: Phage-Gp8	ECOD (develop294)
A	malic	e1n7zA2	A: alpha bundles	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Aminoacid dehydrogenase-like, N-terminal domain	F: malic	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.340.10	Mainly Beta	Sandwich	baseplate structural protein gp8, domain 1	baseplate structural protein gp8, domain 1	CATH (4.3.0)
D	2.170.290.10	Mainly Beta	Beta Complex	baseplate structural protein gp8, domain 2	baseplate structural protein gp8, domain 2	CATH (4.3.0)
C	2.60.340.10	Mainly Beta	Sandwich	baseplate structural protein gp8, domain 1	baseplate structural protein gp8, domain 1	CATH (4.3.0)
C	2.170.290.10	Mainly Beta	Beta Complex	baseplate structural protein gp8, domain 2	baseplate structural protein gp8, domain 2	CATH (4.3.0)
B	2.60.340.10	Mainly Beta	Sandwich	baseplate structural protein gp8, domain 1	baseplate structural protein gp8, domain 1	CATH (4.3.0)
B	2.170.290.10	Mainly Beta	Beta Complex	baseplate structural protein gp8, domain 2	baseplate structural protein gp8, domain 2	CATH (4.3.0)
A	2.60.340.10	Mainly Beta	Sandwich	baseplate structural protein gp8, domain 1	baseplate structural protein gp8, domain 1	CATH (4.3.0)
A	2.170.290.10	Mainly Beta	Beta Complex	baseplate structural protein gp8, domain 2	baseplate structural protein gp8, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF09215	Bacteriophage T4, Gp8 (Phage-Gp8)	Bacteriophage T4, Gp8	Members of this family of viral baseplate structural proteins adopt a structure consisting of a three-layer beta-sandwich with two finger-like loops containing an alpha-helix at the opposite sides of the sandwich. The two peripheral, five-stranded, a ...	Members of this family of viral baseplate structural proteins adopt a structure consisting of a three-layer beta-sandwich with two finger-like loops containing an alpha-helix at the opposite sides of the sandwich. The two peripheral, five-stranded, antiparallel beta-sheets are stacked against the middle, four-stranded, antiparallel beta-sheet. Attachment of this family of proteins to the baseplate during assembly creates a binding site for subsequent attachment of Gp6 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	baseplate structural protein gp8	-	virion assembly viral tail assembly viral process viral life cycle	virus tail virion component virus tail, baseplate

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036327	Bacteriophage T4, Gp8 superfamily	Homologous Superfamily
A, B, C, D	IPR015298	Bacteriophage T4, Gp8	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.