Annotations: 1OGD

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d1ogde_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	RbsD-like	Ribose transport protein RbsD	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d1ogdd_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	RbsD-like	Ribose transport protein RbsD	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d1ogdc_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	RbsD-like	Ribose transport protein RbsD	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d1ogdb_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	RbsD-like	Ribose transport protein RbsD	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d1ogda_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	RbsD-like	Ribose transport protein RbsD	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	RbsD-like	8037471	3000903	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RbsD-like	8037471	3000903	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RbsD-like	8037471	3000903	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RbsD-like	8037471	3000903	SCOP2B (2022-06-29)
A	SCOP2 Family	RbsD-like	8025092	4001142	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RbsD-like	8037471	3000903	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E		e1ogdE1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: tRNA-synt_2	F:	ECOD (20:10:01)
D		e1ogdD1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: tRNA-synt_2	F:	ECOD (20:10:01)
C		e1ogdC1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: tRNA-synt_2	F:	ECOD (20:10:01)
B		e1ogdB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: tRNA-synt_2	F:	ECOD (20:10:01)
A		e1ogdA1	A: FwdE/GAPDH domain-like	X: L30e-like	H: L30e-like	T: RbsD_FucU	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
D	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
C	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
B	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
A	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF05025	RbsD / FucU transport protein family (RbsD_FucU)	RbsD / FucU transport protein family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD	isomerase activity D-ribose pyranase activity catalytic activity intramolecular transferase activity intramolecular lyase activity binding monosaccharide binding carbohydrate binding small molecule binding	monosaccharide metabolic process carbohydrate metabolic process catabolic process carbohydrate catabolic process primary metabolic process small molecule metabolic process metabolic process cellular process pentose metabolic process monosaccharide catabolic process small molecule catabolic process pentose catabolic process D-ribose metabolic process D-ribose catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR023750	RbsD-like superfamily	Homologous Superfamily
A, B, C, D, E	IPR007721	D-ribose pyranase RbsD/L-fucose mutarotase FucU	Family
A, B, C, D, E	IPR023064	D-ribose pyranase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.