1P8C | pdb_00001p8c

Crystal structure of TM1620 (APC4843) from Thermotoga maritima

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1p8cf_	All alpha proteins	AhpD-like	AhpD-like	CMD-like	Hypothetical protein TM1620	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
E	d1p8ce_	All alpha proteins	AhpD-like	AhpD-like	CMD-like	Hypothetical protein TM1620	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
D	d1p8cd_	All alpha proteins	AhpD-like	AhpD-like	CMD-like	Hypothetical protein TM1620	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
C	d1p8cc_	All alpha proteins	AhpD-like	AhpD-like	CMD-like	Hypothetical protein TM1620	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
B	d1p8cb_	All alpha proteins	AhpD-like	AhpD-like	CMD-like	Hypothetical protein TM1620	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
A	d1p8ca_	All alpha proteins	AhpD-like	AhpD-like	CMD-like	Hypothetical protein TM1620	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	AhpD-like	8038413	3001907	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	AhpD-like	8038413	3001907	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	AhpD-like	8038413	3001907	SCOP2B (2022-06-29)
C	SCOP2 Family	CMD-like	8026034	4000771	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	AhpD-like	8038413	3001907	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	AhpD-like	8038413	3001907	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	AhpD-like	8038413	3001907	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	GatB_Yqey	e1p8cF1	A: alpha bundles	X: EGF-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (develop294)
E	GatB_Yqey	e1p8cE1	A: alpha bundles	X: EGF-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (develop294)
D	GatB_Yqey	e1p8cD1	A: alpha bundles	X: EGF-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (develop294)
C	GatB_Yqey	e1p8cC1	A: alpha bundles	X: EGF-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (develop294)
B	GatB_Yqey	e1p8cB1	A: alpha bundles	X: EGF-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (develop294)
A	GatB_Yqey	e1p8cA1	A: alpha bundles	X: EGF-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
E	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
D	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
C	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
B	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
A	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF02627	Carboxymuconolactone decarboxylase family (CMD)	Carboxymuconolactone decarboxylase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	conserved hypothetical protein	oxidoreductase activity catalytic activity peroxidase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor peroxiredoxin activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR003779	Alkyl hydroperoxide reductase AhpD/CMD-like	Domain
A, B, C, D, E A, B, C, D, E, F	IPR029032	AhpD-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR004675	Alkylhydroperoxidase AhpD core	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.