1QV0
Atomic resolution structure of obelin from Obelia longissima
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1qv0a_ | All alpha proteins | EF Hand-like | EF-hand | Calmodulin-like | Calcium-regulated photoprotein | (Obelia longissima ) [TaxId: 32570 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EF-hand_7_2 | e1qv0A2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_2 | ECOD (1.6) |
A | EF-hand_7_1 | e1qv0A1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.238.10 | Mainly Alpha | Orthogonal Bundle | Recoverin | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13202 | EF hand (EF-hand_5) | EF hand | Domain | ||
PF13499 | EF-hand domain pair (EF-hand_7) | EF-hand domain pair | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Obelin | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018247 | EF-Hand 1, calcium-binding site | Binding Site | |
IPR002048 | EF-hand domain | Domain | |
IPR011992 | EF-hand domain pair | Homologous Superfamily | |
IPR050145 | Centrin/CML-like | Family |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
Renilla-luciferin 2-monooxygenase M-CSA #768 | Oblein, a protein from the bio-luminescent hydroid, Obleia longissima, is a calcium-regulated photoprotein. The addition of calcium regulates, but is not necessary for bio-luminescence and there is no requirement for an additional substrate (e.g. molecular oxygen). Calcium-regulated photoproteins are found in and are responsible for the light emission of a variety of bio-luminescent marine organisms, mostly coelenterates. Obelin consists of a single polypeptide chain to which the substrate, 2-hydroxy-coelenterazine is tightly, but not covalently bound. Calcium binding results in blue bio-luminescence via oxidative carboxylation of the substrate to the excited state coelenteramide product through several intermediates. | Defined by 5 residues: HIS:A-22TRP:A-92TYR:A-138HIS:A-175TYR:A-190 | EC: 1.13.12.5 (PDB Primary Data) |