1U05 | pdb_00001u05

Crystal structure of protein yfiH from Shigella flexneri, Pfam DUF152

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1u05b_	Alpha and beta proteins (a+b)	CNF1/YfiH-like putative cysteine hydrolases	CNF1/YfiH-like putative cysteine hydrolases	YfiH-like	Hypothetical protein yfiH	(Shigella flexneri ) [TaxId: 623 ],	SCOPe (2.08)
A	d1u05a_	Alpha and beta proteins (a+b)	CNF1/YfiH-like putative cysteine hydrolases	CNF1/YfiH-like putative cysteine hydrolases	YfiH-like	Hypothetical protein yfiH	(Shigella flexneri ) [TaxId: 623 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	CNF1/YfiH-like putative cysteine hydrolases	8041825	3001230	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CNF1/YfiH-like putative cysteine hydrolases	8041825	3001230	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e1u05B1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: CheD	F:	ECOD (20:10:01)
A		e1u05A1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: CheD	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.60.140.10	Alpha Beta	4-Layer Sandwich	CNF1/YfiH-like putative cysteine hydrolases	CNF1/YfiH-like putative cysteine hydrolases	CATH (4.3.0)
A	3.60.140.10	Alpha Beta	4-Layer Sandwich	CNF1/YfiH-like putative cysteine hydrolases	CNF1/YfiH-like putative cysteine hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02578	Multi-copper polyphenol oxidoreductase laccase (Cu-oxidase_4)	Multi-copper polyphenol oxidoreductase laccase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	orf, conserved hypothetical protein	oxidoreductase activity catalytic activity cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines adenosine deaminase activity hydrolase activity deaminase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds oxidoreductase activity catalytic activity cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines adenosine deaminase activity hydrolase activity deaminase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds pentosyltransferase activity glycosyltransferase activity S-methyl-5-thioadenosine phosphorylase activity purine-nucleoside phosphorylase activity transferase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011324	Cytotoxic necrotizing factor-like, catalytic	Homologous Superfamily
A, B	IPR003730	Multi-copper polyphenol oxidoreductase	Family
A, B	IPR038371	Multi-copper polyphenol oxidoreductase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.