1VGF | pdb_00001vgf

volvatoxin A2 (diamond crystal form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1vgfb_	Alpha and beta proteins (a+b)	CytB endotoxin-like	CytB endotoxin-like	CytB endotoxin-like	Volvatoxin A2	(Volvariella volvacea ) [TaxId: 36659 ],	SCOPe (2.08)
A	d1vgfa_	Alpha and beta proteins (a+b)	CytB endotoxin-like	CytB endotoxin-like	CytB endotoxin-like	Volvatoxin A2	(Volvariella volvacea ) [TaxId: 36659 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	CytB endotoxin-like	8038206	3000359	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CytB endotoxin-like	8038206	3000359	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e1vgfB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Pkinase	F:	ECOD (20:10:01)
A		e1vgfA1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Pkinase	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.198.10	Alpha Beta	3-Layer(aba) Sandwich	Delta-endotoxin CytB	Delta-endotoxin CytB-like	CATH (4.3.0)
A	3.40.198.10	Alpha Beta	3-Layer(aba) Sandwich	Delta-endotoxin CytB	Delta-endotoxin CytB-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	volvatoxin A2	-	sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001615	Delta-endotoxin CytB	Family
A, B	IPR035918	Delta-endotoxin CytB-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.