1VGY
Crystal structure of succinyl diaminopimelate desuccinylase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Bacterial dinuclear zinc exopeptidases | 8023362 | 4000587 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Bacterial exopeptidase dimerisation domain | 8023363 | 4001271 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Zn-dependent exopeptidases | 8035742 | 3000662 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Bacterial exopeptidase dimerisation domain | 8035743 | 3001194 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Bacterial exopeptidase dimerisation domain | 8035743 | 3001194 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Zn-dependent exopeptidases | 8035742 | 3000662 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Zn-dependent exopeptidases | 8035742 | 3000662 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | M20_dimer_1 | e1vgyA1 | A: a+b two layers | X: Alpha-beta plaits | H: Bacterial exopeptidase dimerisation domain (From Topology) | T: Bacterial exopeptidase dimerisation domain | F: M20_dimer_1 | ECOD (1.6) |
A | Peptidase_M20_1st | e1vgyA2 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Peptidase_M20_1st | ECOD (1.6) |
B | M20_dimer_1 | e1vgyB1 | A: a+b two layers | X: Alpha-beta plaits | H: Bacterial exopeptidase dimerisation domain (From Topology) | T: Bacterial exopeptidase dimerisation domain | F: M20_dimer_1 | ECOD (1.6) |
B | Peptidase_M20_1st | e1vgyB2 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Peptidase_M20_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.630.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | Zn peptidases | CATH (4.3.0) |
A | 3.30.70.360 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B | 3.40.630.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | Zn peptidases | CATH (4.3.0) |
B | 3.30.70.360 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01546 | Peptidase family M20/M25/M40 (Peptidase_M20) | Peptidase family M20/M25/M40 | - | Family | |
PF07687 | Peptidase dimerisation domain (M20_dimer) | Peptidase dimerisation domain | This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases [1]. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005941 | Succinyl-diaminopimelate desuccinylase, proteobacteria | Family | |
IPR002933 | Peptidase M20 | Family | |
IPR050072 | Peptidase M20A family, bacterial cell wall biosynthesis | Family | |
IPR036264 | Bacterial exopeptidase dimerisation domain | Homologous Superfamily | |
IPR011650 | Peptidase M20, dimerisation domain | Domain |