1W8N
Contribution of the Active Site Aspartic Acid to Catalysis in the Bacterial Neuraminidase from Micromonospora viridifaciens.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1w8na1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | E-set domains of sugar-utilizing enzymes | Sialidase, linker domain | (Micromonospora viridifaciens ) [TaxId: 1881 ], | SCOPe (2.08) |
A | d1w8na2 | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | Galactose-binding domain | Sialidase, C-terminal domain | (Micromonospora viridifaciens ) [TaxId: 1881 ], | SCOPe (2.08) |
A | d1w8na3 | All beta proteins | 6-bladed beta-propeller | Sialidases | Sialidases (neuraminidases) | Micromonospora sialidase, N-terminal domain | (Micromonospora viridifaciens ) [TaxId: 1881 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | E set domains | 8054893 | 3000070 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Sialidases | 8043344 | 3001607 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | galactose-binding domain-like | 8043343 | 3000087 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F5_F8_type_C_1 | e1w8nA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: F5_F8_type_C_1 | ECOD (1.6) |
A | NPCBM_assoc_like | e1w8nA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: NPCBM_assoc_like | ECOD (1.6) |
A | BNR_2 | e1w8nA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: BNR_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.120.10.10 | Mainly Beta | 6 Propeller | Neuraminidase | CATH (4.3.0) | |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00754 | F5/8 type C domain (F5_F8_type_C) | F5/8 type C domain | This domain is also known as the discoidin (DS) domain family [1]. | Domain | |
PF13088 | BNR repeat-like domain (BNR_2) | BNR repeat-like domain | - | Repeat | |
PF10633 | NPCBM-associated, NEW3 domain of alpha-galactosidase (NPCBM_assoc) | NPCBM-associated, NEW3 domain of alpha-galactosidase | The English-language version of the first reference can be found on pages 388-399 of the above. This domain has been named NEW3 but its actual function is not known. It is found on proteins which are bacterial galactosidases [1]. The domain is associ ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018905 | Alpha-galactosidase, NEW3 domain | Domain | |
IPR006311 | Twin-arginine translocation pathway, signal sequence | Conserved Site | |
IPR011040 | Sialidase | Domain | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR036278 | Sialidase superfamily | Homologous Superfamily | |
IPR000421 | Coagulation factor 5/8, C-terminal domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR026856 | Sialidase family | Family |