Crystal structures of novel monomeric monocot mannose-binding lectins from Gastrodia elata
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1xd5a_ | All beta proteins | beta-Prism II | alpha-D-mannose-specific plant lectins | alpha-D-mannose-specific plant lectins | Gastrodianin (antifungal protein) | (Gastrodia elata ) [TaxId: 91201 ], | SCOPe (2.08) |
| B | d1xd5b_ | All beta proteins | beta-Prism II | alpha-D-mannose-specific plant lectins | alpha-D-mannose-specific plant lectins | Gastrodianin (antifungal protein) | (Gastrodia elata ) [TaxId: 91201 ], | SCOPe (2.08) |
| C | d1xd5c_ | All beta proteins | beta-Prism II | alpha-D-mannose-specific plant lectins | alpha-D-mannose-specific plant lectins | Gastrodianin (antifungal protein) | (Gastrodia elata ) [TaxId: 91201 ], | SCOPe (2.08) |
| D | d1xd5d_ | All beta proteins | beta-Prism II | alpha-D-mannose-specific plant lectins | alpha-D-mannose-specific plant lectins | Gastrodianin (antifungal protein) | (Gastrodia elata ) [TaxId: 91201 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | alpha-D-mannose-specific plant lectins | 8031455 | 4002774 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | alpha-D-mannose-specific plant lectins | 8043833 | 3001730 | SCOP2 (2022-06-29) |
| B | SCOP2B Superfamily | alpha-D-mannose-specific plant lectins | 8043833 | 3001730 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | alpha-D-mannose-specific plant lectins | 8043833 | 3001730 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | alpha-D-mannose-specific plant lectins | 8043833 | 3001730 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Ldl_recept_b | e1xd5B1 | A: alpha bundles | X: Cloacin translocation domain | H: Cloacin translocation domain | T: Cloacin translocation domain | F: Ldl_recept_b | ECOD (develop294) |
| C | Ldl_recept_b | e1xd5C1 | A: alpha bundles | X: Cloacin translocation domain | H: Cloacin translocation domain | T: Cloacin translocation domain | F: Ldl_recept_b | ECOD (develop294) |
| D | Ldl_recept_b | e1xd5D1 | A: alpha bundles | X: Cloacin translocation domain | H: Cloacin translocation domain | T: Cloacin translocation domain | F: Ldl_recept_b | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.90.10.10 | Mainly Beta | Orthogonal Prism | Agglutinin, subunit A | Bulb-type lectin domain | CATH (4.3.0) |
| B | 2.90.10.10 | Mainly Beta | Orthogonal Prism | Agglutinin, subunit A | Bulb-type lectin domain | CATH (4.3.0) |
| C | 2.90.10.10 | Mainly Beta | Orthogonal Prism | Agglutinin, subunit A | Bulb-type lectin domain | CATH (4.3.0) |
| D | 2.90.10.10 | Mainly Beta | Orthogonal Prism | Agglutinin, subunit A | Bulb-type lectin domain | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| antifungal protein GAFP-1 | - | - |
