1YG8 | pdb_00001yg8

The structure of a V6A variant of ClpP.


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd1yg8c_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Jd1yg8j_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Kd1yg8k_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ld1yg8l_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Nd1yg8n_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Qd1yg8q_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Sd1yg8s_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Td1yg8t_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Vd1yg8v_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Wd1yg8w_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Yd1yg8y_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Zd1yg8z_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Xd1yg8x_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ud1yg8u_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Rd1yg8r_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Pd1yg8p_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Od1yg8o_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Md1yg8m_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Id1yg8i_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Hd1yg8h_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Gd1yg8g_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Fd1yg8f_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ed1yg8e_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd1yg8d_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd1yg8b_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad1yg8a_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth a]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
USCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth a]e1yg8a1 A: HTHX: HTHH: winged helix domainT: CopCF:ECOD (20:10:01)
Ce1yg8C1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Je1yg8J1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ke1yg8K1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Le1yg8L1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ne1yg8N1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Qe1yg8Q1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Se1yg8S1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Te1yg8T1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ve1yg8V1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
We1yg8W1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ye1yg8Y1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ze1yg8Z1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Xe1yg8X1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ue1yg8U1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Re1yg8R1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Pe1yg8P1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Oe1yg8O1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Me1yg8M1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ie1yg8I1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
He1yg8H1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ge1yg8G1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Fe1yg8F1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ee1yg8E1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
De1yg8D1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
BA [auth b]e1yg8b1 A: HTHX: HTHH: winged helix domainT: CopCF:ECOD (20:10:01)
Be1yg8B1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)
Ae1yg8A1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: ECH_1F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
AA [auth a]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
C3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
J3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
K3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
L3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
N3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
Q3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
S3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
T3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
V3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
W3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
Y3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
Z3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
X3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
U3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
R3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
P3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
O3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
M3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
I3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
H3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
G3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
F3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
E3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
D3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
BA [auth b]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
B3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
A3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ATP-dependent Clp protease proteolytic subunit