1YIQ | pdb_00001yiq

Molecular cloning and structural analysis of quinohemoprotein alcohol dehydrogenase ADHIIG from Pseudomonas putida HK5. Compariison to the other quinohemoprotein alcohol dehydrogenase ADHIIB found in the same microorganism.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Quinoprotein alcohol dehydrogenase-like	8099511	4002772	SCOP2 (2022-06-29)
A	SCOP2 Family	Quinoprotein alcohol dehydrogenase, C-terminal domain	8101103	4002854	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Quinoprotein alcohol dehydrogenase-like	8099512	3001727	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c	8101104	3000815	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PQQ_2	e1yiqA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)
A	Cytochrome_CBB3	e1yiqA2	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrome_CBB3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.140.10.10	Mainly Beta	8 Propeller	Methanol Dehydrogenase	Chain A	CATH (4.3.0)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13360	Outer membrane protein assembly factor BamB (PQQ_2)	Outer membrane protein assembly factor BamB	-	Repeat
A	PF13442	Cytochrome C oxidase, cbb3-type, subunit III (Cytochrome_CBB3)	Cytochrome C oxidase, cbb3-type, subunit III		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Quinohemoprotein alcohol dehydrogenase	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding tetrapyrrole binding heme binding oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors lactaldehyde reductase (NADPH) activity catalytic activity organic acid binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding tetrapyrrole binding heme binding oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors lactaldehyde reductase (NADPH) activity catalytic activity organic acid binding anion binding carboxylic acid binding heterocyclic compound binding pyrroloquinoline quinone binding electron transfer activity	electron transport chain metabolic process cellular process generation of precursor metabolites and energy	cellular anatomical structure membrane periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
A	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A	IPR002372	Pyrrolo-quinoline quinone repeat domain	Domain
A	IPR017512	PQQ-dependent dehydrogenase, methanol/ethanol family	Family
A	IPR009056	Cytochrome c-like domain	Domain
A	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.