1YPQ | pdb_00001ypq

Human Oxidized Low Density Lipoprotein Receptor LOX-1 Dioxane Complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1ypqb_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ypqa1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	Oxidised low density lipoprotein	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	C-type lectin-like	8034834	3001261	SCOP2B (2022-06-29)
A	SCOP2 Family	C-type lectin domain	8022454	4002453	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	C-type lectin-like	8034834	3001261	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	FGE-sulfatase	e1ypqB1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: FGE-sulfatase	ECOD (develop294)
A	Lectin_C	e1ypqA1	A: few secondary structure elements	X: C-type lectin-like	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	oxidised low density lipoprotein (lectin-like) receptor 1	binding carbohydrate binding lipoprotein particle receptor activity low-density lipoprotein particle receptor activity cargo receptor activity identical protein binding protein binding	immune system process lipoprotein metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process cell adhesion cell-cell adhesion leukocyte cell-cell adhesion response to stimulus defense response response to stress inflammatory response immune system process lipoprotein metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process cell adhesion cell-cell adhesion leukocyte cell-cell adhesion response to stimulus defense response response to stress inflammatory response proteolysis multicellular organismal process system process circulatory system process blood circulation	protein-containing complex receptor complex membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle protein-containing complex receptor complex membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule membrane specific granule extracellular region cell periphery plasma membrane membrane microdomain membrane raft nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR016187	C-type lectin fold	Homologous Superfamily
A, B	IPR001304	C-type lectin-like	Domain
A, B	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B	IPR033992	Natural killer cell receptor-like, C-type lectin-like domain	Domain
A, B	IPR052332	Oxidized LDL receptor 1-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P78380	cardiomyopathy myocardial infarction hypertensive disorder juvenile idiopathic arthritis congestive heart failure Left-Sided Heart Failure lung carcinoma malignant mesothelioma medulloblastoma astrocytic tumor pilocytic astrocytoma cystic fibrosis lung adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm cardiomyopathy myocardial infarction hypertensive disorder juvenile idiopathic arthritis congestive heart failure Left-Sided Heart Failure lung carcinoma malignant mesothelioma medulloblastoma astrocytic tumor pilocytic astrocytoma cystic fibrosis lung adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm non-small cell lung carcinoma atherosclerosis psoriasis ductal breast carcinoma in situ heart failure IgA glomerulonephritis large cell medulloblastoma lung cancer malignant glioma MALT lymphoma osteosarcoma breast carcinoma tuberculosis glioblastoma invasive ductal breast carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.