1YVC | pdb_00001yvc

Solution structure of the conserved protein from the gene locus MMP0076 of Methanococcus maripaludis. Northeast Structural Genomics target MrR5.

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1yvca1 All beta proteins OB-fold Nucleic acid-binding proteins TRAM domain Hypothetical protein MMP0076 (Methanococcus maripaludis ) [TaxId: 39152 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyTRAM domain 8022565 4000872 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyNucleic acid-binding proteins 8034945 3000135 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae1yvcA1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: KOW, Ribosomal_L26F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01938TRAM domain (TRAM)TRAM domainThis small domain has no known function. However it may perform a nucleic acid binding role (Bateman A. unpublished observation). Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR002792TRAM domainDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily