1UC4
Structure of diol dehydratase complexed with (S)-1,2-propanediol
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cobalamin (vitamin B12)-dependent enzymes | 8043858 | 3000609 | SCOP2B (2022-06-29) |
D [auth L] | SCOP2B Superfamily | Cobalamin (vitamin B12)-dependent enzymes | 8043858 | 3000609 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | B12-dependent dehydatase associated subunit | 8044419 | 3000491 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | B12-dependent dehydatase associated subunit | 8044419 | 3000491 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | Diol dehydratase, gamma subunit | 8036835 | 3001460 | SCOP2B (2022-06-29) |
F [auth M] | SCOP2B Superfamily | Diol dehydratase, gamma subunit | 8036835 | 3001460 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Dehydratase_LU | e1uc4A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Dehydratase_LU | ECOD (1.6) |
D [auth L] | Dehydratase_LU | e1uc4L1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Dehydratase_LU | ECOD (1.6) |
B | Dehydratase_MU | e1uc4B1 | A: a/b three-layered sandwiches | X: B12-dependent dehydratase associated subunit (From Topology) | H: B12-dependent dehydratase associated subunit (From Topology) | T: B12-dependent dehydratase associated subunit | F: Dehydratase_MU | ECOD (1.6) |
E | Dehydratase_MU | e1uc4E1 | A: a/b three-layered sandwiches | X: B12-dependent dehydratase associated subunit (From Topology) | H: B12-dependent dehydratase associated subunit (From Topology) | T: B12-dependent dehydratase associated subunit | F: Dehydratase_MU | ECOD (1.6) |
C [auth G] | Dehydratase_SU | e1uc4G1 | A: alpha bundles | X: Diol dehydratase, gamma subunit (From Topology) | H: Diol dehydratase, gamma subunit (From Topology) | T: Diol dehydratase, gamma subunit | F: Dehydratase_SU | ECOD (1.6) |
F [auth M] | Dehydratase_SU | e1uc4M1 | A: alpha bundles | X: Diol dehydratase, gamma subunit (From Topology) | H: Diol dehydratase, gamma subunit (From Topology) | T: Diol dehydratase, gamma subunit | F: Dehydratase_SU | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.350 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Diol/glycerol dehydratase, large subunit | CATH (4.3.0) |
D [auth L] | 3.20.20.350 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Diol/glycerol dehydratase, large subunit | CATH (4.3.0) |
B | 3.40.50.10150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | B12-dependent dehydatase associated subunit | CATH (4.3.0) |
E | 3.40.50.10150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | B12-dependent dehydatase associated subunit | CATH (4.3.0) |
C [auth G] | 1.10.1510.20 | Mainly Alpha | Orthogonal Bundle | Hypothetical Protein Yqey | Chain: A | CATH (4.3.0) |
F [auth M] | 1.10.1510.20 | Mainly Alpha | Orthogonal Bundle | Hypothetical Protein Yqey | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth L] | PF02286 | Dehydratase large subunit (Dehydratase_LU) | Dehydratase large subunit | This family contains the large subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances. | Domain |
PF02288 | Dehydratase medium subunit (Dehydratase_MU) | Dehydratase medium subunit | This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances. | Domain | |
C [auth G], F [auth M] | PF02287 | Dehydratase small subunit (Dehydratase_SU) | Dehydratase small subunit | This family contains the small subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, D [auth L] | diol dehydrase alpha subunit | - | - | |
diol dehydrase beta subunit | - | - | ||
C [auth G], F [auth M] | diol dehydrase gamma subunit | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth L] | IPR003206 | Diol/glycerol dehydratase, large subunit | Domain |
A, D [auth L] | IPR036999 | Diol/glycerol dehydratase, large subunit superfamily | Homologous Superfamily |
A, D [auth L] | IPR016176 | Cobalamin (vitamin B12)-dependent enzyme, catalytic | Homologous Superfamily |
IPR025541 | Propanediol/glycerol dehydratase, medium subunit | Family | |
IPR003208 | Diol/glycerol dehydratase/dehydratase reactivating factor | Family | |
IPR010254 | B12-dependent dehydratases, beta subunit | Homologous Superfamily | |
C [auth G], F [auth M] | IPR036091 | Propanediol/glycerol dehydratase, small subunit superfamily | Homologous Superfamily |
C [auth G], F [auth M] | IPR003207 | Propanediol/glycerol dehydratase, small subunit | Family |