2A3V
Structural basis for broad DNA-specificity in integron recombination
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | Phage_integrase_C | e2a3vA3 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
E [auth A] | Phage_integrase_N | e2a3vA2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
E [auth A] | Phage_int_SAM_4 | e2a3vA1 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
F [auth B] | Phage_integrase_C | e2a3vB2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
F [auth B] | Phage_integrase_N | e2a3vB1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
F [auth B] | Phage_int_SAM_4 | e2a3vB3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
G [auth C] | Phage_integrase_C | e2a3vC2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
G [auth C] | Phage_integrase_N | e2a3vC1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
G [auth C] | Phage_int_SAM_4 | e2a3vC3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
H [auth D] | Phage_integrase_C | e2a3vD2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
H [auth D] | Phage_integrase_N | e2a3vD1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
H [auth D] | Phage_int_SAM_4 | e2a3vD3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth A] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
E [auth A] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
F [auth B] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
F [auth B] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
G [auth C] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
G [auth C] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
H [auth D] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
H [auth D] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth B], G [auth C], H [auth D] | PF00589 | Phage integrase family (Phage_integrase) | Phage integrase family | - | Family |
E [auth A], F [auth B], G [auth C], H [auth D] | PF13495 | Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4) | Phage integrase, N-terminal SAM-like domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth E], C [auth G] | DNA (31-MER) | - | - | - |
B [auth F], D [auth H] | DNA (34-MER) | - | - | - |
E [auth A], F [auth B], G [auth C], H [auth D] | site-specific recombinase IntI4 | - |