2BDR | pdb_00002bdr

Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2bdrb_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Ureidoglycolate hydrolase AllA	Ureidoglycolate hydrolase AllA	(Pseudomonas putida KT2440 ) [TaxId: 160488 ],	SCOPe (2.08)
A	d2bdra1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Ureidoglycolate hydrolase AllA	Ureidoglycolate hydrolase AllA	(Pseudomonas putida KT2440 ) [TaxId: 160488 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	RmlC-like cupins	8037876	3001825	SCOP2B (2022-06-29)
A	SCOP2 Family	Ureidoglycolate hydrolase AllA	8025497	4003236	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RmlC-like cupins	8037876	3001825	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Copper-bind	e2bdrB1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
A	Cupin_2	e2bdrA1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Cupin_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.480	Mainly Beta	Sandwich	Jelly Rolls	Ureidoglycolate hydrolase	CATH (4.3.0)
A	2.60.120.480	Mainly Beta	Sandwich	Jelly Rolls	Ureidoglycolate hydrolase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF04115	Ureidoglycolate lyase (Ureidogly_lyase)	Ureidoglycolate lyase	Ureidoglycolate lyase (EC:4.3.2.3) is one of the enzymes that acts upon ureidoglycolate, an intermediate of purine catabolism, releasing urea [2]. The enzyme has in the past been wrongly assigned to EC:3.5.3.19, enzymes which release ammonia from ure ...	Ureidoglycolate lyase (EC:4.3.2.3) is one of the enzymes that acts upon ureidoglycolate, an intermediate of purine catabolism, releasing urea [2]. The enzyme has in the past been wrongly assigned to EC:3.5.3.19, enzymes which release ammonia from ureidoglycolate [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Ureidoglycolate hydrolase	amidine-lyase activity lyase activity ureidoglycolate lyase activity catalytic activity carbon-nitrogen lyase activity ureidoglycolate hydrolase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	catabolic process purine nucleobase metabolic process primary metabolic process purine-containing compound catabolic process purine nucleobase catabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process nucleobase catabolic process nucleobase-containing small molecule metabolic process nucleobase metabolic process small molecule metabolic process metabolic process cellular process allantoin metabolic process catabolic process purine nucleobase metabolic process primary metabolic process purine-containing compound catabolic process purine nucleobase catabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process nucleobase catabolic process nucleobase-containing small molecule metabolic process nucleobase metabolic process small molecule metabolic process metabolic process cellular process allantoin metabolic process allantoin catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR047233	Ureidoglycolate amidohydrolase, cupin domain	Domain
A, B	IPR007247	Ureidoglycolate lyase	Family
A, B	IPR024060	Ureidoglycolate lyase domain superfamily	Homologous Superfamily
A, B	IPR023525	Ureidoglycolate lyase, bacterial	Family
A, B	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.