2BO2 | pdb_00002bo2

EGF Domains 1,2,5 of human EMR2, a 7-TM immune system molecule, in complex with calcium.

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e2bo2B1	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T:	F:	ECOD (20:10:01)
A		e2bo2A1	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)
A	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07645	Calcium-binding EGF domain (EGF_CA)	Calcium-binding EGF domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	EGF-LIKE MODULE CONTAINING MUCIN-LIKE HORMONE RECEPTOR-LIKE 2 PRECURSOR	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding glycosaminoglycan binding chondroitin sulfate binding carbohydrate derivative binding sulfur compound binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity	cell chemotaxis cellular response to stimulus chemotaxis response to stimulus response to external stimulus granulocyte migration leukocyte migration cellular response to chemical stimulus taxis granulocyte chemotaxis immune system process response to chemical myeloid leukocyte migration cell migration cell chemotaxis cellular response to stimulus chemotaxis response to stimulus response to external stimulus granulocyte migration leukocyte migration cellular response to chemical stimulus taxis granulocyte chemotaxis immune system process response to chemical myeloid leukocyte migration cell migration cellular process cell motility leukocyte chemotaxis locomotion regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling biological regulation signal transduction cell communication cell adhesion defense response response to stress inflammatory response G protein-coupled receptor signaling pathway establishment of organelle localization regulation of immune effector process regulation of localization multicellular organismal process regulation of myeloid leukocyte mediated immunity regulated exocytosis cell activation involved in immune response leukocyte degranulation myeloid leukocyte mediated immunity vesicle-mediated transport myeloid leukocyte activation localization establishment of localization in cell leukocyte mediated immunity regulation of immune system process immune response vacuolar localization establishment of localization mast cell degranulation immune effector process regulation of secretion regulation of leukocyte mediated immunity exocytosis lysosome localization cellular localization transport regulation of mast cell degranulation leukocyte activation regulation of regulated secretory pathway secretion by cell regulation of secretion by cell organelle localization leukocyte activation involved in immune response mast cell activation regulation of leukocyte degranulation mast cell mediated immunity secretion regulation of transport cell activation export from cell regulation of vesicle-mediated transport myeloid cell activation involved in immune response mast cell activation involved in immune response regulation of exocytosis	cellular anatomical structure membrane ruffle cell leading edge plasma membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane plasma membrane region cell projection membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR017983	GPCR, family 2, secretin-like, conserved site	Conserved Site
A, B	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
A, B	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
A, B	IPR003056	GPCR, family 2, ADGRE2/ADGRE5	Family
A, B	IPR000832	GPCR, family 2, secretin-like	Family
A, B	IPR000203	GPS motif	Conserved Site
A, B	IPR000742	EGF-like domain	Domain
A, B	IPR017981	GPCR, family 2-like, 7TM	Domain
A, B	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
A, B	IPR001881	EGF-like calcium-binding domain	Domain
A, B	IPR046338	GAIN domain superfamily	Homologous Superfamily
A, B	IPR057244	GAIN, subdomain B	Domain
A, B	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9UHX3	vibratory urticaria autosomal dominant vibratory urticaria familial dermatographia head and neck cancer malignant glioma breast cancer Familial dermographism interstitial cystitis ulcerative colitis chronic obstructive pulmonary disease glioblastoma lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.