2DWK

Crystal structure of the RUN domain of mouse Rap2 interacting protein x

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2dwka_	All alpha proteins	RUN domain-like	RUN domain-like	RUN domain	automated matches	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RUN domain-like	8039379	3001659	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RUN	e2dwkA1	A: alpha arrays	X: RUN domain (From Topology)	H: RUN domain (From Topology)	T: RUN domain	F: RUN	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.58.900	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02759	RUN domain (RUN)	RUN domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein RUFY3	-	developmental process cellular developmental process cell differentiation cellular process regulation of neuron projection development multicellular organismal process axonogenesis regulation of cellular component organization regulation of cellular process regulation of developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development developmental process cellular developmental process cell differentiation cellular process regulation of neuron projection development multicellular organismal process axonogenesis regulation of cellular component organization regulation of cellular process regulation of developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis regulation of axonogenesis anatomical structure development cellular component organization or biogenesis regulation of anatomical structure morphogenesis system development regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development regulation of plasma membrane bounded cell projection organization positive regulation of locomotion regulation of cell motility positive regulation of biological process positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion positive regulation of cellular process negative regulation of biological process regulation of cell differentiation regulation of neurogenesis regulation of cell development negative regulation of cellular component organization negative regulation of axonogenesis negative regulation of multicellular organismal process regulation of nervous system development negative regulation of neurogenesis negative regulation of cellular process negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation negative regulation of cell projection organization regulation of multicellular organismal development negative regulation of developmental process negative regulation of neuron projection development negative regulation of cell development positive regulation of nervous system development positive regulation of developmental process positive regulation of cell projection organization positive regulation of cell development positive regulation of multicellular organismal process positive regulation of cellular component organization positive regulation of cell differentiation positive regulation of neurogenesis positive regulation of axonogenesis axon extension regulation of growth regulation of cellular component size developmental growth regulation of biological quality positive regulation of developmental growth developmental growth involved in morphogenesis cell growth regulation of axon extension regulation of extent of cell growth positive regulation of axon extension regulation of cell size neuron projection extension regulation of developmental growth developmental cell growth growth positive regulation of cell growth regulation of cell growth positive regulation of growth regulation of anatomical structure size organelle organization actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization protein localization regulation of localization establishment of protein localization cellular localization nitrogen compound transport regulation of protein localization transport positive regulation of establishment of protein localization positive regulation of protein transport localization cellular macromolecule localization establishment of localization in cell positive regulation of intracellular transport regulation of intracellular transport regulation of transport regulation of establishment of protein localization intracellular transport regulation of protein transport establishment of localization positive regulation of transport protein transport regulation of cellular localization macromolecule localization positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport regulation of establishment of cell polarity regulation of establishment or maintenance of cell polarity establishment of cell polarity establishment or maintenance of cell polarity	cellular anatomical structure endomembrane system cell projection cell leading edge plasma membrane bounded cell projection lamellipodium somatodendritic compartment cell body perikaryon neuronal cell body membrane anchoring junction cell junction dendrite cellular anatomical structure endomembrane system cell projection cell leading edge plasma membrane bounded cell projection lamellipodium somatodendritic compartment cell body perikaryon neuronal cell body membrane anchoring junction cell junction dendrite dendritic tree neuron projection intracellular anatomical structure cytoplasm growth cone axon distal axon site of polarized growth actin-based cell projection filopodium

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037213	RUN domain superfamily	Homologous Superfamily
A	IPR004012	RUN domain	Domain
A	IPR047335	RUN and FYVE domain-containing protein 1-3	Family
A	IPR047334	RUN and FYVE domain-containing protein 3, RUN domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.