2FYN | pdb_00002fyn

Crystal Structure Analysis of the double mutant Rhodobacter Sphaeroides bc1 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
R	SCOP2B Superfamily	ISP domain	8052870	3000233	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ISP transmembrane anchor	8052868	3000753	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ISP domain	8052870	3000233	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ISP transmembrane anchor	8052868	3000753	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ISP transmembrane anchor	8052868	3000753	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ISP domain	8052870	3000233	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ISP domain	8052870	3000233	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ISP transmembrane anchor	8052868	3000753	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ISP transmembrane anchor	8052868	3000753	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ISP domain	8052870	3000233	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ISP domain	8052870	3000233	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ISP transmembrane anchor	8052868	3000753	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Cytochrome c	8099084	3000815	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	8101132	3000762	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	8101132	3000762	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Cytochrome c	8099084	3000815	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	8101132	3000762	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Cytochrome c	8099084	3000815	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Cytochrome c	8099084	3000815	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	8101132	3000762	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	8101132	3000762	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cytochrome c	8099084	3000815	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cytochrome c	8099084	3000815	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	8101132	3000762	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R	ANF_receptor	e2fynR2	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: ANF_receptor	ECOD (v294.1)
R	DNA_gyraseB_C,Toprim	e2fynR4	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DNA_gyraseB_C,Toprim	ECOD (v294.1)
O	ANF_receptor	e2fynO2	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: ANF_receptor	ECOD (v294.1)
O	DNA_gyraseB_C,Toprim	e2fynO4	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DNA_gyraseB_C,Toprim	ECOD (v294.1)
L	ANF_receptor	e2fynL2	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: ANF_receptor	ECOD (v294.1)
L	DNA_gyraseB_C,Toprim	e2fynL4	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DNA_gyraseB_C,Toprim	ECOD (v294.1)
I	ANF_receptor	e2fynI2	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: ANF_receptor	ECOD (v294.1)
I	DNA_gyraseB_C,Toprim	e2fynI3	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DNA_gyraseB_C,Toprim	ECOD (v294.1)
F	ANF_receptor	e2fynF2	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: ANF_receptor	ECOD (v294.1)
F	DNA_gyraseB_C,Toprim	e2fynF4	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DNA_gyraseB_C,Toprim	ECOD (v294.1)
C	ANF_receptor	e2fynC2	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: ANF_receptor	ECOD (v294.1)
C	DNA_gyraseB_C,Toprim	e2fynC3	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DNA_gyraseB_C,Toprim	ECOD (v294.1)
Q	Pyrid_oxidase_2	e2fynQ1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Pyrid_oxidase_2	ECOD (v294.1)
N	zf-MYND	e2fynN1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: zf-MYND	ECOD (v294.1)
K	Pyrid_oxidase_2	e2fynK1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Pyrid_oxidase_2	ECOD (v294.1)
H	Pyrid_oxidase_2	e2fynH1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Pyrid_oxidase_2	ECOD (v294.1)
E	Pyrid_oxidase_2	e2fynE1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Pyrid_oxidase_2	ECOD (v294.1)
B	Cytochrom_C1	e2fynB1	A: a/b three-layered sandwiches	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins	T: N0 domain in phage tail proteins and secretins	F: Cytochrom_C1	ECOD (v294.1)
P	PCNA_N	e2fynP2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.1)
P	Peptidase_S8	e2fynP3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_S8	ECOD (v294.1)
M	PCNA_N	e2fynM2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.1)
M	Peptidase_S8	e2fynM3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_S8	ECOD (v294.1)
J	PCNA_N	e2fynJ2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.1)
J	Peptidase_S8	e2fynJ3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_S8	ECOD (v294.1)
G	PCNA_N	e2fynG2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.1)
G	Peptidase_S8	e2fynG3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_S8	ECOD (v294.1)
D	PCNA_N	e2fynD2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.1)
D	Peptidase_S8	e2fynD3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_S8	ECOD (v294.1)
A	RNase_H	e2fynA1	A: a/b three-layered sandwiches	X: Globin-like	H: Globin-like	T: Globin-like	F: RNase_H	ECOD (v294.1)
A	Peptidase_S8	e2fynA3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_S8	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
R	1.20.5.510	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
R	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
O	1.20.5.510	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
O	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
L	1.20.5.510	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
L	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
I	1.20.5.510	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
I	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
F	1.20.5.510	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
F	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
C	1.20.5.510	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
C	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
Q	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
Q	1.20.5.100	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Cytochrome c1, transmembrane anchor, C-terminal	CATH (4.3.0)
N	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
N	1.20.5.100	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Cytochrome c1, transmembrane anchor, C-terminal	CATH (4.3.0)
K	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
K	1.20.5.100	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Cytochrome c1, transmembrane anchor, C-terminal	CATH (4.3.0)
H	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
H	1.20.5.100	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Cytochrome c1, transmembrane anchor, C-terminal	CATH (4.3.0)
E	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
E	1.20.5.100	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Cytochrome c1, transmembrane anchor, C-terminal	CATH (4.3.0)
B	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
B	1.20.5.100	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Cytochrome c1, transmembrane anchor, C-terminal	CATH (4.3.0)
P	1.20.810.10	Mainly Alpha	Up-down Bundle	Cytochrome Bc1 Complex	Chain C	CATH (4.3.0)
M	1.20.810.10	Mainly Alpha	Up-down Bundle	Cytochrome Bc1 Complex	Chain C	CATH (4.3.0)
J	1.20.810.10	Mainly Alpha	Up-down Bundle	Cytochrome Bc1 Complex	Chain C	CATH (4.3.0)
G	1.20.810.10	Mainly Alpha	Up-down Bundle	Cytochrome Bc1 Complex	Chain C	CATH (4.3.0)
D	1.20.810.10	Mainly Alpha	Up-down Bundle	Cytochrome Bc1 Complex	Chain C	CATH (4.3.0)
A	1.20.810.10	Mainly Alpha	Up-down Bundle	Cytochrome Bc1 Complex	Chain C	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F, I, L, O C, F, I, L, O, R	Ubiquinol-cytochrome c reductase iron-sulfur subunit	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity quinol-cytochrome-c reductase activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity quinol-cytochrome-c reductase activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	cell periphery cellular anatomical structure plasma membrane membrane
B, E, H, K, N B, E, H, K, N, Q	Cytochrome c1	binding tetrapyrrole binding heme binding electron transfer activity cation binding ion binding metal ion binding small molecule binding	-	cell periphery cellular anatomical structure plasma membrane membrane
A, D, G, J, M A, D, G, J, M, P	Cytochrome b	oxidoreductase activity catalytic activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity quinol-cytochrome-c reductase activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity cation binding oxidoreductase activity catalytic activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity quinol-cytochrome-c reductase activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity cation binding ion binding binding metal ion binding small molecule binding	cellular respiration energy derivation by oxidation of organic compounds respiratory electron transport chain electron transport chain metabolic process cellular process generation of precursor metabolites and energy	respiratory chain complex protein-containing complex cellular anatomical structure cytochrome complex catalytic complex transmembrane transporter complex membrane membrane protein complex transporter complex respiratory chain complex III cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F, I, L, O C, F, I, L, O, R	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
C, F, I, L, O C, F, I, L, O, R	IPR005805	Rieske iron-sulphur protein, C-terminal	Domain
C, F, I, L, O C, F, I, L, O, R	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily
C, F, I, L, O C, F, I, L, O, R	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
C, F, I, L, O C, F, I, L, O, R	IPR014349	Rieske iron-sulphur protein	Family
C, F, I, L, O C, F, I, L, O, R	IPR019470	Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal	Domain
C, F, I, L, O C, F, I, L, O, R	IPR006317	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	Domain
C, F, I, L, O C, F, I, L, O, R	IPR019546	Twin-arginine translocation pathway, signal sequence, bacterial/archaeal	Conserved Site
B, E, H, K, N B, E, H, K, N, Q	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
B, E, H, K, N B, E, H, K, N, Q	IPR002326	Cytochrome c1	Family
B, E, H, K, N B, E, H, K, N, Q	IPR009056	Cytochrome c-like domain	Domain
A, D, G, J, M A, D, G, J, M, P	IPR036150	Cytochrome b/b6, C-terminal domain superfamily	Homologous Superfamily
A, D, G, J, M A, D, G, J, M, P	IPR027387	Cytochrome b/b6-like domain superfamily	Homologous Superfamily
A, D, G, J, M A, D, G, J, M, P	IPR048260	Cytochrome b/b6, C-terminal domain, eukaryotic/bacterial	Domain
A, D, G, J, M A, D, G, J, M, P	IPR016174	Di-haem cytochrome, transmembrane	Homologous Superfamily
A, D, G, J, M A, D, G, J, M, P	IPR005798	Cytochrome b/b6, C-terminal	Domain
A, D, G, J, M A, D, G, J, M, P	IPR048259	Cytochrome b/b6, N-terminal domain, eukaryotic/bacterial	Domain
A, D, G, J, M A, D, G, J, M, P	IPR030689	Cytochrome b	Family
A, D, G, J, M A, D, G, J, M, P	IPR005797	Cytochrome b/b6, N-terminal domain	Domain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Electron Transport Chain Complexes: Complex III (Cytochrome bc₁)	Cytochrome bc₁

Prepare Data

Validate Data

Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 2FYN | pdb_00002fyn

Crystal Structure Analysis of the double mutant Rhodobacter Sphaeroides bc1 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

2FYN | pdb_00002fyn