2G7M | pdb_00002g7m

Crystal structure of B. fragilis N-succinylornithine transcarbamylase P90E mutant complexed with carbamoyl phosphate and N-acetylnorvaline

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth Y]	d2g7my1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Transcarbamylase-like protein	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
B [auth Y]	d2g7my3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
C [auth Z]	d2g7mz1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Transcarbamylase-like protein	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
C [auth Z]	d2g7mz3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
D [auth C]	d2g7mc1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Transcarbamylase-like protein	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
D [auth C]	d2g7mc3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
E [auth D]	d2g7md1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Transcarbamylase-like protein	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
E [auth D]	d2g7md3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
F [auth E]	d2g7me1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Transcarbamylase-like protein	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
F [auth E]	d2g7me3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
A [auth X]	d2g7mx1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Transcarbamylase-like protein	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
A [auth X]	d2g7mx3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth Y]	HTHP	e2g7mY1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
C [auth Z]	HTHP	e2g7mZ1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
D [auth C]	HTHP	e2g7mC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
E [auth D]	HTHP	e2g7mD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
F [auth E]	HTHP	e2g7mE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
A [auth X]	HTHP	e2g7mX1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth Y]	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)
C [auth Z]	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)
D [auth C]	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)
E [auth D]	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)
F [auth E]	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)
A [auth X]	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], F [auth E]	putative ornithine carbamoyltransferase	binding amino acid binding carboxyl- or carbamoyltransferase activity ornithine carbamoyltransferase activity transferase activity, transferring one-carbon groups transferase activity catalytic activity	L-arginine biosynthetic process oxoacid metabolic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process alpha-amino acid metabolic process L-glutamine family amino acid biosynthetic process carboxylic acid biosynthetic process L-arginine biosynthetic process via ornithine arginine metabolic process small molecule metabolic process small molecule biosynthetic process carboxylic acid metabolic process primary metabolic process L-arginine biosynthetic process oxoacid metabolic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process alpha-amino acid metabolic process L-glutamine family amino acid biosynthetic process carboxylic acid biosynthetic process L-arginine biosynthetic process via ornithine arginine metabolic process small molecule metabolic process small molecule biosynthetic process carboxylic acid metabolic process primary metabolic process L-amino acid biosynthetic process L-amino acid metabolic process proteinogenic amino acid metabolic process amino acid biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process metabolic process cellular process alpha-amino acid biosynthetic process non-proteinogenic amino acid metabolic process citrulline biosynthetic process citrulline metabolic process non-proteinogenic amino acid biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], F [auth E]	IPR006132	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Domain
A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], F [auth E]	IPR006131	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Domain
A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], F [auth E]	IPR036901	Aspartate/ornithine carbamoyltransferase superfamily	Homologous Superfamily
A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], F [auth E]	IPR006130	Aspartate/ornithine carbamoyltransferase	Family
A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], A [auth X], B [auth Y], C [auth Z], D [auth C], E [auth D], F [auth E]	IPR043696	N-succinylornithine carbamoyltransferase ArgF'-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.