Annotations: 2GNN

Crystal Structure of the Orf Virus NZ2 Variant of VEGF-E

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2gnnd_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	(Orf virus (strain NZ2) ) [TaxId: 10259 ],	SCOPe (2.08)
C	d2gnnc_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	(Orf virus (strain NZ2) ) [TaxId: 10259 ],	SCOPe (2.08)
B	d2gnnb_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	(Orf virus (strain NZ2) ) [TaxId: 10259 ],	SCOPe (2.08)
A	d2gnna_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	(Orf virus (strain NZ2) ) [TaxId: 10259 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	Platelet-derived growth factor-like	8070300	4003427	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Cystine-knot cytokines	8070301	3000846	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Cystine-knot cytokines	8070301	3000846	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cystine-knot cytokines	8070301	3000846	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cystine-knot cytokines	8070301	3000846	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PCNA_N	e2gnnD1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.2)
C	PCNA_N	e2gnnC1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.2)
B	PCNA_N	e2gnnB1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.2)
A	SH3_1	e2gnnA1	A: beta barrels	X: Globin-like	H: Globin-like	T: Globin-like	F: SH3_1	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.10.90.10	Mainly Beta	Ribbon	Cystine Knot Cytokines, subunit B	Cystine-knot cytokines	CATH (4.3.0)
C	2.10.90.10	Mainly Beta	Ribbon	Cystine Knot Cytokines, subunit B	Cystine-knot cytokines	CATH (4.3.0)
B	2.10.90.10	Mainly Beta	Ribbon	Cystine Knot Cytokines, subunit B	Cystine-knot cytokines	CATH (4.3.0)
A	2.10.90.10	Mainly Beta	Ribbon	Cystine Knot Cytokines, subunit B	Cystine-knot cytokines	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Vascular endothelial growth factor homolog	molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity chemoattractant activity signaling receptor activator activity growth factor activity protein binding binding signaling receptor binding cytokine receptor binding vascular endothelial growth factor receptor binding growth factor receptor binding	positive chemotaxis chemotaxis positive regulation of locomotion regulation of biological process response to stimulus regulation of response to external stimulus positive regulation of positive chemotaxis biological regulation positive regulation of biological process response to external stimulus induction of positive chemotaxis regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus regulation of positive chemotaxis positive chemotaxis chemotaxis positive regulation of locomotion regulation of biological process response to stimulus regulation of response to external stimulus positive regulation of positive chemotaxis biological regulation positive regulation of biological process response to external stimulus induction of positive chemotaxis regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus regulation of positive chemotaxis positive regulation of response to external stimulus taxis regulation of response to stimulus response to chemical regulation of locomotion locomotion response to decreased oxygen levels response to hypoxia response to stress response to oxygen levels response to abiotic stimulus cell population proliferation regulation of cellular process positive regulation of cell population proliferation endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation positive regulation of endothelial cell proliferation cellular process regulation of epithelial cell proliferation epithelial cell proliferation positive regulation of cellular process positive regulation of cell division cell division regulation of cell division	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR023581	Platelet-derived growth factor, conserved site	Conserved Site
A, B, C, D	IPR000072	PDGF/VEGF domain	Domain
A, B, C, D	IPR050507	Platelet-derived/Vascular endothelial growth factor	Family
A, B, C, D	IPR029034	Cystine-knot cytokine	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.