2GQF | pdb_00002gqf

Crystal structure of flavoprotein HI0933 from Haemophilus influenzae Rd

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2gqfa1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	HI0933 N-terminal domain-like	Hypothetical protein HI0933	(Haemophilus influenzae ) [TaxId: 727 ],	SCOPe (2.08)
A	d2gqfa2	Multi-domain proteins (alpha and beta)	HI0933 insert domain-like	HI0933 insert domain-like	HI0933 insert domain-like	Hypothetical protein HI0933	(Haemophilus influenzae ) [TaxId: 727 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	HI0933-like	8056140	4000073	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HI0933-like	8056141	3000052	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	S13-like H2TH domain	8056142	3000053	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HI0933 insert barrel domain-like	8056143	3000036	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2gqfA1	A: cradle loop barrel	X: RIFT-related	H: Alanine racemase-C	T: HI0933_like_1st	F:	ECOD (20:10:01)
A		e2gqfA2	A: HhH/H2TH	X: H2TH	H: H2TH	T: HI0933_like_1st	F:	ECOD (20:10:01)
A		e2gqfA3	A: Rossmann-like	X: Rossmann-related	H: FAD/NAD(P)-binding domain	T: Pyr_redox, FAD_binding_2, HI0933_like	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
A	2.40.30.10	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
A	1.10.8.260	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF22780	HI0933-like protein barrel and H2TH domain (HI0933_like_1st)	HI0933-like protein barrel and H2TH domain	-	Family
A	PF03486	HI0933-like protein Rossmann domain (HI0933_like)	HI0933-like protein Rossmann domain	This entry represents the Rossmann like domain in the HI0933 protein.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Hypothetical protein HI0933	oxidoreductase activity catalytic activity	ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR055178	RsdA/BaiN/AoA(So)-like, insert domain	Domain
A	IPR004792	3-Dehydro-bile acid delta(4,6)-reductase-like	Family
A	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
A	IPR057661	RsdA/BaiN/AoA(So)-like, Rossmann fold-like domain	Domain
A	IPR023166	BaiN-like, insert domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.