2H28

Crystal structure of YeeU from E. coli. Northeast Structural Genomics target ER304

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2h28a1	Alpha and beta proteins (a+b)	Profilin-like	YeeU-like	YagB/YeeU/YfjZ-like	Hypothetical protein YeeU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d2h28a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d2h28b_	Alpha and beta proteins (a+b)	Profilin-like	YeeU-like	YagB/YeeU/YfjZ-like	Hypothetical protein YeeU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YagB/YeeU/YfjZ-like	8029766	4003946	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YeeU-like	8042145	3001896	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YeeU-like	8042145	3001896	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CbeA_antitoxin	e2h28A1	A: a+b three layers	X: Profilin-like	H: YagB/YeeU/YfjZ-like (From Topology)	T: YagB/YeeU/YfjZ-like	F: CbeA_antitoxin	ECOD (1.6)
B	CbeA_antitoxin	e2h28B1	A: a+b three layers	X: Profilin-like	H: YagB/YeeU/YfjZ-like (From Topology)	T: YagB/YeeU/YfjZ-like	F: CbeA_antitoxin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
B	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF06154	CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A (CbeA_antitoxin)	CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hypothetical protein yeeU	cytoskeletal protein binding protein binding binding cation binding ion binding metal ion binding small molecule binding	positive regulation of organelle organization regulation of cytoskeleton organization regulation of biological process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization positive regulation of cytoskeleton organization biological regulation positive regulation of biological process regulation of organelle organization cellular component organization organelle organization cellular process cellular component organization or biogenesis positive regulation of organelle organization regulation of cytoskeleton organization regulation of biological process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization positive regulation of cytoskeleton organization biological regulation positive regulation of biological process regulation of organelle organization cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization positive regulation of cellular process negative regulation of cellular process negative regulation of biological process regulation of cell killing negative regulation of cell killing cell killing	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR038025	Antitoxin CbeA superfamily	Homologous Superfamily
A, B	IPR009320	Antitoxin CbeA	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.