2HJQ
NMR Structure of Bacillus Subtilis Protein YqbF, Northeast Structural Genomics Target SR449
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2hjqa1 | All alpha proteins | LEM/SAP HeH motif | Rho N-terminal domain-like | YqbF C-terminal domain-like | Hypothetical protein YqbF | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
A | d2hjqa2 | Alpha and beta proteins (a+b) | GINS/PriA/YqbF domain | PriA/YqbF domain | YqbF N-terminal domain-like | Hypothetical protein YqbF | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
A | d2hjqa3 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | YqbF C-terminal domain-like | 8021842 | 4001171 | SCOP2 (2022-06-29) |
A | SCOP2 Family | YqbF N-terminal domain-like | 8021845 | 4001702 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Rho N-terminal domain-like | 8034222 | 3001774 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PriA/YqbF domain | 8034225 | 3000274 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07943 | e2hjqA1 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: EUF07943 | ECOD (1.6) |
A | YqbF | e2hjqA2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: YqbF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.5.20 | Alpha Beta | 3-Layer(aba) Sandwich | Ribosomal Protein L9 | domain 1 | CATH (4.3.0) |
A | 1.10.720.10 | Mainly Alpha | Orthogonal Bundle | Transcription Termination Factor Rho, Rna-binding Domain | Chain A, Domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21488 | YqbF, HeH motif (YqbF_HeH) | YqbF, HeH motif | This entry represents the HeH domain of the uncharacterised protein YqbF from Bacillus subtilis. | Domain | |
PF14553 | YqbF, hypothetical protein domain (YqbF) | YqbF, hypothetical protein domain | This N-terminal domain is found in Bacillus and related spp. The function is not known. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027926 | Uncharacterised protein YqbF, N-terminal domain | Domain | |
IPR036269 | Rho termination factor, N-terminal domain superfamily | Homologous Superfamily | |
IPR048424 | YqbF, C-terminal domain | Domain | |
IPR036840 | YqbF domain superfamily | Homologous Superfamily |