2I52 | pdb_00002i52

Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2i52f2	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	MK0786-like	Hypothetical protein PTO0218	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
F	d2i52f3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
E	d2i52e2	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	MK0786-like	Hypothetical protein PTO0218	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
E	d2i52e3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
D	d2i52d2	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	MK0786-like	Hypothetical protein PTO0218	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
D	d2i52d3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
C	d2i52c2	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	MK0786-like	Hypothetical protein PTO0218	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
C	d2i52c3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
B	d2i52b2	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	MK0786-like	Hypothetical protein PTO0218	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
B	d2i52b3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
A	d2i52a1	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	MK0786-like	Hypothetical protein PTO0218	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)
A	d2i52a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Picrophilus oshimae DSM 9789 ) [TaxId: 1122961 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	MptD-like	8089687	3000167	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	MptD-like	8089687	3000167	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	MptD-like	8089687	3000167	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MptD-like	8089687	3000167	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MptD-like	8089687	3000167	SCOP2B (2022-06-29)
A	SCOP2 Family	MptD-like	8089686	4000388	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MptD-like	8089687	3000167	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	FGE-sulfatase	e2i52F1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: FGE-sulfatase	ECOD (develop294)
E	FGE-sulfatase	e2i52E1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: FGE-sulfatase	ECOD (develop294)
D	FGE-sulfatase	e2i52D1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: FGE-sulfatase	ECOD (develop294)
C	FGE-sulfatase	e2i52C1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: FGE-sulfatase	ECOD (develop294)
B	FGE-sulfatase	e2i52B1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: FGE-sulfatase	ECOD (develop294)
A	DHNA	e2i52A1	A: few secondary structure elements	X: Creatinase/aminopeptidase-like	H: MK0786-like	T: MK0786-like	F: DHNA	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
E	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
D	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
C	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
B	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
A	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Hypothetical protein	dihydroneopterin aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036839	7,8-dihydroneopterin aldolase (MptD) superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR007181	Dihydroneopterin aldolase MtpD, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR027508	7,8-dihydroneopterin aldolase, MptD	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.