2PBI | pdb_00002pbi

The multifunctional nature of Gbeta5/RGS9 revealed from its crystal structure


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd2pbid1 All beta proteins 7-bladed beta-propeller WD40 repeat-like automated matches automated matches house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Dd2pbid2 Artifacts Tags Tags Tags N-terminal Tags house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Bd2pbib_ All beta proteins 7-bladed beta-propeller WD40 repeat-like automated matches automated matches house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DDUF3239e2pbiD1 A: alpha bundlesX: HTHH: NudixT: NudixF: DUF3239ECOD (develop294)
BWD40, WD40_Gbetae2pbiB1 A: alpha bundlesX: Profilin-likeH: sensor domainsT: sensor domainsF: WD40, WD40_GbetaECOD (develop294)
CGlucokinasee2pbiC2 A: alpha bundlesX: beta-GraspH: HTHT: winged helix domainF: GlucokinaseECOD (develop294)
CHMGL-likee2pbiC5 A: alpha bundlesX: RuvA-CH: post-HMGL domain-likeT: post-HMGL domain-likeF: HMGL-likeECOD (develop294)
ARGS_DHEXe2pbiA1 A: alpha bundlesX: Helical extension domain in Regulator of G-protein signaling 9H: Helical extension domain in Regulator of G-protein signaling 9T: Helical extension domain in Regulator of G-protein signaling 9F: RGS_DHEXECOD (develop294)
ADEPe2pbiA2 A: alpha bundlesX: Thioredoxin-likeH: ClpP/crotonaseT: ClpP/crotonaseF: DEPECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D
PF25391G protein beta WD-40 repeat protein (WD40_Gbeta)G protein beta WD-40 repeat protein- Repeat
A, C
PF00615Regulator of G protein signaling domain (RGS)Regulator of G protein signaling domainRGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits. Domain
A, C
PF18148Regulator of G-protein signalling DHEX domain (RGS_DHEX)Regulator of G-protein signalling DHEX domainThis domain is found in RGS9 (Class C) regulator of G-protein signalling (RGS) protein present in Mus musculus. RGS proteins attenuate heterotrimeric G-protein signalling by enhancing the intrinsic GTPase activity of G-alpha subunits and are vital fo ...This domain is found in RGS9 (Class C) regulator of G-protein signalling (RGS) protein present in Mus musculus. RGS proteins attenuate heterotrimeric G-protein signalling by enhancing the intrinsic GTPase activity of G-alpha subunits and are vital for proper signal transduction kinetics. The domain is referred to as DEP helical extension (DHEX) because it is located next to N-terminal Dishevelled/Egl-10/Pleckstrin homology (DEP) domain. Both the DEP and DHEX domains are necessary, but not sufficient, to bind anchoring proteins such as RGS9 anchor protein. DHEX has no close structural homologs [1]. This domain is also found in regulator of G-protein signaling 7 (RGS7), the crystal structure of which has been solved [2].
Domain
A, C
PF00631GGL domain (G-gamma)GGL domainG-protein gamma like domains (GGL) are found in the gamma subunit of the heterotrimeric G protein complex and in regulators of G protein signaling (RGS) proteins [1]. It is also found fused to an inactive Galpha in the Dictyostelium protein gbqA [2] ...G-protein gamma like domains (GGL) are found in the gamma subunit of the heterotrimeric G protein complex and in regulators of G protein signaling (RGS) proteins [1]. It is also found fused to an inactive Galpha in the Dictyostelium protein gbqA [2]. G-gamma likely shares a common origin with the helical N-terminal unit of G-beta [2]. All organisms that posses a G-beta possess a G-gamma [2].
Domain
A, C
PF00610Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) (DEP)Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)The DEP domain [1] is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell [2-3]. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) prot ...The DEP domain [1] is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell [2-3]. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting [4-5]. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit [6-7].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
Guanine nucleotide-binding protein subunit beta 5
A, C
Regulator of G-protein signaling 9