2PCE | pdb_00002pce

Crystal structure of putative mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d2pceh2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
H	d2pceh1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
H	d2pceh3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
G	d2pceg2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
G	d2pceg1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
G	d2pceg3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
F	d2pcef2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
F	d2pcef1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
F	d2pcef3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
E	d2pcee2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
E	d2pcee1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
E	d2pcee3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
D	d2pced2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
D	d2pced1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
D	d2pced3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
C	d2pcec2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
C	d2pcec1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
C	d2pcec3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
B	d2pceb2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
B	d2pceb1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
B	d2pceb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
A	d2pcea2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
A	d2pcea1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
A	d2pcea3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	ACR_tran	e2pceH1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
H	ERG4_ERG24	e2pceH2	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (v294.1)
G	ACR_tran	e2pceG1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
G	ERG4_ERG24	e2pceG2	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (v294.1)
F	ACR_tran	e2pceF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
F	ERG4_ERG24	e2pceF2	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (v294.1)
E	ACR_tran	e2pceE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
E	ERG4_ERG24	e2pceE2	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (v294.1)
D	ACR_tran	e2pceD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
D	ERG4_ERG24	e2pceD2	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (v294.1)
C	ACR_tran	e2pceC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
C	ERG4_ERG24	e2pceC2	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (v294.1)
B	ACR_tran	e2pceB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
B	ERG4_ERG24	e2pceB2	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (v294.1)
A	Trypsin	e2pceA1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Trypsin	ECOD (v294.1)
A	ERG4_ERG24	e2pceA2	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
H	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
G	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
G	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
F	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
F	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
E	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
E	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
D	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
D	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
C	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
C	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
B	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
B	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
A	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain (MR_MLE_N)	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	SCOP reports fold similarity with enolase N-terminal domain.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF13378	Enolase C-terminal domain-like (MR_MLE_C)	Enolase C-terminal domain-like	This domain appears at the C-terminus of many of the proteins that carry the MR_MLE_N Pfam:PF02746 domain. EC:4.2.1.40.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	putative mandelate racemase/muconate lactonizing enzyme	catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR034593	D-galactonate dehydratase DgoD-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR029065	Enolase_C-like	Unknown
A, B, C, D, E A, B, C, D, E, F, G, H	IPR029017	Enolase-like, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036849	Enolase-like, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013341	Mandelate racemase, N-terminal domain	Domain