2PFL | pdb_00002pfl

CRYSTAL STRUCTURE OF PFL FROM E.COLI

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2pfla_	Alpha and beta proteins (a/b)	PFL-like glycyl radical enzymes	PFL-like glycyl radical enzymes	PFL-like	Pyruvate formate-lyase, PFL	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d2pflb_	Alpha and beta proteins (a/b)	PFL-like glycyl radical enzymes	PFL-like glycyl radical enzymes	PFL-like	Pyruvate formate-lyase, PFL	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PFL-like glycyl radical enzymes	8042340	3001069	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PFL-like glycyl radical enzymes	8042340	3001069	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rieske	e2pflA1	A: alpha bundles	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: Rieske	ECOD (develop294)
B	Rieske	e2pflB1	A: alpha bundles	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: Rieske	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.70.20	Alpha Beta	Alpha-Beta Barrel	Anaerobic Ribonucleotide-triphosphate Reductase Large Chain		CATH (4.3.0)
B	3.20.70.20	Alpha Beta	Alpha-Beta Barrel	Anaerobic Ribonucleotide-triphosphate Reductase Large Chain		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01228	Glycine radical (Gly_radical)	Glycine radical		Domain
A, B	PF02901	Pyruvate formate lyase-like (PFL-like)	Pyruvate formate lyase-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	PROTEIN (PYRUVATE FORMATE-LYASE)	acetyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity C-acyltransferase activity C-acetyltransferase activity formate C-acetyltransferase activity	pyruvate metabolic process catabolic process pyruvate fermentation via PFL oxoacid metabolic process energy derivation by oxidation of organic compounds pyruvate fermentation carboxylic acid metabolic process organic acid metabolic process organic acid catabolic process generation of precursor metabolites and energy fermentation monocarboxylic acid catabolic process carboxylic acid catabolic process small molecule metabolic process pyruvate metabolic process catabolic process pyruvate fermentation via PFL oxoacid metabolic process energy derivation by oxidation of organic compounds pyruvate fermentation carboxylic acid metabolic process organic acid metabolic process organic acid catabolic process generation of precursor metabolites and energy fermentation monocarboxylic acid catabolic process carboxylic acid catabolic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process small molecule catabolic process pyruvate catabolic process monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process primary metabolic process glucose metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004184	Pyruvate formate lyase domain	Domain
A, B	IPR001150	Glycine radical domain	Domain
A, B	IPR005949	Formate acetyltransferase	Family
A, B	IPR050244	Autonomous Glycyl Radical Cofactor	Family
A, B	IPR019777	Formate C-acetyltransferase glycine radical, conserved site	Conserved Site

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	formate C-acetyltransferase M-CSA #30	Pyruvate formate-lyase catlayses the CoA-dependent, reversible cleavage of pyruvate into acetyal-CoA and formation. This enzyme is required for anaerobic glucose fermentation, utilised by various species of microorganism. The resting state of this enzyme has a glycyl radical, this radical is created by the action of a radical SAM superfamily activating protein (PFL-AE) and is quenched in an oxygenated atmosphere leading to enzyme inactivation.	Defined by 4 residues: TRP:A-333CYS:A-418CYS:A-419GLY:A-734 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 2.3.1.54 (PDB Primary Data) Search M-CSA Motif + EC 2.3.1.54

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.