crystal structure of trans-aconitate bound to methylaconitate isomerase PrpF from Shewanella oneidensis
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d2pw0b1 | Alpha and beta proteins (a+b) | Diaminopimelate epimerase-like | Diaminopimelate epimerase-like | automated matches | automated matches | (Shewanella oneidensis ) [TaxId: 70863 ], | SCOPe (2.08) |
| A | d2pw0a1 | Alpha and beta proteins (a+b) | Diaminopimelate epimerase-like | Diaminopimelate epimerase-like | automated matches | automated matches | (Shewanella oneidensis ) [TaxId: 70863 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | PK_Tyr_Ser-Thr | e2pw0B1 | A: alpha bundles | X: HTH | H: Nudix | T: Nudix | F: PK_Tyr_Ser-Thr | ECOD (develop294) |
| B | Tubulin | e2pw0B3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Tubulin | ECOD (develop294) |
| A | CoV_NSP4_C | e2pw0A3 | A: alpha bundles | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: CoV_NSP4_C | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.10.310.10 | Alpha Beta | Roll | Diaminopimelate Epimerase | Chain A, domain 1 | CATH (4.3.0) |
| A | 3.10.310.10 | Alpha Beta | Roll | Diaminopimelate Epimerase | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF04303 | PrpF protein (PrpF) | PrpF protein | - | Family |














